Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
umahsn authored Mar 2, 2022
1 parent c9461e5 commit 2abfb78
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -40,7 +40,7 @@ An example of NanoCaller usage is provided in [sample](sample). The results are
which is also in the file [sample_call](sample/sample_call). This example should take about 10-15 minutes to run.

## Trained models
Trained models for [ONT](https://github.com/WGLab/NanoCaller/tree/master/scripts/release_data/ONT_models) data, [CLR](https://github.com/WGLab/NanoCaller/tree/master/scripts/release_data/clr_models) data and [HIFI](https://github.com/WGLab/NanoCaller/tree/master/scripts/release_data/hifi_models) data can be found [here](https://github.com/WGLab/NanoCaller/tree/master/scripts/release_data). These models are trained on chr1-22 of the genomes stated below, unless mentioned othewise.
Trained models for [ONT](https://github.com/WGLab/NanoCaller/tree/master/nanocaller_src/release_data/ONT_models) data, [CLR](https://github.com/WGLab/NanoCaller/tree/master/nanocaller_src/release_data/clr_models) data and [HIFI](https://github.com/WGLab/NanoCaller/tree/master/nanocaller_src/release_data/hifi_models) data can be found [here](https://github.com/WGLab/NanoCaller/tree/master/nanocaller_src/release_data). These models are trained on chr1-22 of the genomes stated below, unless mentioned othewise.

You can specify SNP and indel models using `--snp_model` and `--indel_model` parameters with a model name from tables below. For instance, if you want to use 'ONT-HG002\_bonito' SNP model and 'ONT-HG002' indel model, use the following command:

Expand Down

0 comments on commit 2abfb78

Please sign in to comment.