Updated files to account for name changes in bigplanet. #58
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Sep 26, 2023 in 0s
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Check warning on line 0 in tests.Checkpoint.test_checkpoint
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test_checkpoint (tests.Checkpoint.test_checkpoint) failed
junit/test-results.xml
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def test_checkpoint():
# Get current path
path = pathlib.Path(__file__).parents[0].absolute()
sys.path.insert(1, str(path.parents[0]))
dir = (path / "MP_Checkpoint")
checkpoint = (path / ".MP_Checkpoint")
# Get the number of cores on the machine
cores = mp.cpu_count()
if cores == 1:
warnings.warn("There is only 1 core on the machine",stacklevel=3)
else:
# Remove anything from previous tests
if (dir).exists():
shutil.rmtree(dir)
if (checkpoint).exists():
os.remove(checkpoint)
# Run vspace
subprocess.check_output(["vspace", "vspace.in"], cwd=path)
# Run multi-planet
> subprocess.check_output(["multiplanet", "vspace.in"], cwd=path)
tests/Checkpoint/test_checkpoint.py:33:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/share/miniconda/envs/vplanet/lib/python3.7/subprocess.py:411: in check_output
**kwargs).stdout
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
input = None, capture_output = False, timeout = None, check = True
popenargs = (['multiplanet', 'vspace.in'],)
kwargs = {'cwd': PosixPath('/home/runner/work/multi-planet/multi-planet/tests/Checkpoint'), 'stdout': -1}
process = <subprocess.Popen object at 0x7f1ba551ee50>, stdout = b''
stderr = None, retcode = 1
def run(*popenargs,
input=None, capture_output=False, timeout=None, check=False, **kwargs):
"""Run command with arguments and return a CompletedProcess instance.
The returned instance will have attributes args, returncode, stdout and
stderr. By default, stdout and stderr are not captured, and those attributes
will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them.
If check is True and the exit code was non-zero, it raises a
CalledProcessError. The CalledProcessError object will have the return code
in the returncode attribute, and output & stderr attributes if those streams
were captured.
If timeout is given, and the process takes too long, a TimeoutExpired
exception will be raised.
There is an optional argument "input", allowing you to
pass bytes or a string to the subprocess's stdin. If you use this argument
you may not also use the Popen constructor's "stdin" argument, as
it will be used internally.
By default, all communication is in bytes, and therefore any "input" should
be bytes, and the stdout and stderr will be bytes. If in text mode, any
"input" should be a string, and stdout and stderr will be strings decoded
according to locale encoding, or by "encoding" if set. Text mode is
triggered by setting any of text, encoding, errors or universal_newlines.
The other arguments are the same as for the Popen constructor.
"""
if input is not None:
if kwargs.get('stdin') is not None:
raise ValueError('stdin and input arguments may not both be used.')
kwargs['stdin'] = PIPE
if capture_output:
if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None:
raise ValueError('stdout and stderr arguments may not be used '
'with capture_output.')
kwargs['stdout'] = PIPE
kwargs['stderr'] = PIPE
with Popen(*popenargs, **kwargs) as process:
try:
stdout, stderr = process.communicate(input, timeout=timeout)
except TimeoutExpired as exc:
process.kill()
if _mswindows:
# Windows accumulates the output in a single blocking
# read() call run on child threads, with the timeout
# being done in a join() on those threads. communicate()
# _after_ kill() is required to collect that and add it
# to the exception.
exc.stdout, exc.stderr = process.communicate()
else:
# POSIX _communicate already populated the output so
# far into the TimeoutExpired exception.
process.wait()
raise
except: # Including KeyboardInterrupt, communicate handled that.
process.kill()
# We don't call process.wait() as .__exit__ does that for us.
raise
retcode = process.poll()
if check and retcode:
raise CalledProcessError(retcode, process.args,
> output=stdout, stderr=stderr)
E subprocess.CalledProcessError: Command '['multiplanet', 'vspace.in']' returned non-zero exit status 1.
/usr/share/miniconda/envs/vplanet/lib/python3.7/subprocess.py:512: CalledProcessError
Check warning on line 0 in tests.MpStatus.test_mpstatus
github-actions / Unit Test Results
test_mpstatus (tests.MpStatus.test_mpstatus) failed
junit/test-results.xml
Raw output
def test_mpstatus():
# Get current path
path = pathlib.Path(__file__).parents[0].absolute()
sys.path.insert(1, str(path.parents[0]))
dir = (path / "MP_Status")
checkpoint = (path / ".MP_Status")
# Get the number of cores on the machine
cores = mp.cpu_count()
if cores == 1:
warnings.warn("There is only 1 core on the machine", stacklevel=3)
else:
# Remove anything from previous tests
if (dir).exists():
shutil.rmtree(dir)
if (checkpoint).exists():
os.remove(checkpoint)
# Run vspace
subprocess.check_output(["vspace", "vspace.in"], cwd=path)
# Run multi-planet and mpstatus
> subprocess.check_output(["multiplanet", "vspace.in"], cwd=path)
tests/MpStatus/test_mpstatus.py:33:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/share/miniconda/envs/vplanet/lib/python3.7/subprocess.py:411: in check_output
**kwargs).stdout
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
input = None, capture_output = False, timeout = None, check = True
popenargs = (['multiplanet', 'vspace.in'],)
kwargs = {'cwd': PosixPath('/home/runner/work/multi-planet/multi-planet/tests/MpStatus'), 'stdout': -1}
process = <subprocess.Popen object at 0x7f1ba5516b10>, stdout = b''
stderr = None, retcode = 1
def run(*popenargs,
input=None, capture_output=False, timeout=None, check=False, **kwargs):
"""Run command with arguments and return a CompletedProcess instance.
The returned instance will have attributes args, returncode, stdout and
stderr. By default, stdout and stderr are not captured, and those attributes
will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them.
If check is True and the exit code was non-zero, it raises a
CalledProcessError. The CalledProcessError object will have the return code
in the returncode attribute, and output & stderr attributes if those streams
were captured.
If timeout is given, and the process takes too long, a TimeoutExpired
exception will be raised.
There is an optional argument "input", allowing you to
pass bytes or a string to the subprocess's stdin. If you use this argument
you may not also use the Popen constructor's "stdin" argument, as
it will be used internally.
By default, all communication is in bytes, and therefore any "input" should
be bytes, and the stdout and stderr will be bytes. If in text mode, any
"input" should be a string, and stdout and stderr will be strings decoded
according to locale encoding, or by "encoding" if set. Text mode is
triggered by setting any of text, encoding, errors or universal_newlines.
The other arguments are the same as for the Popen constructor.
"""
if input is not None:
if kwargs.get('stdin') is not None:
raise ValueError('stdin and input arguments may not both be used.')
kwargs['stdin'] = PIPE
if capture_output:
if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None:
raise ValueError('stdout and stderr arguments may not be used '
'with capture_output.')
kwargs['stdout'] = PIPE
kwargs['stderr'] = PIPE
with Popen(*popenargs, **kwargs) as process:
try:
stdout, stderr = process.communicate(input, timeout=timeout)
except TimeoutExpired as exc:
process.kill()
if _mswindows:
# Windows accumulates the output in a single blocking
# read() call run on child threads, with the timeout
# being done in a join() on those threads. communicate()
# _after_ kill() is required to collect that and add it
# to the exception.
exc.stdout, exc.stderr = process.communicate()
else:
# POSIX _communicate already populated the output so
# far into the TimeoutExpired exception.
process.wait()
raise
except: # Including KeyboardInterrupt, communicate handled that.
process.kill()
# We don't call process.wait() as .__exit__ does that for us.
raise
retcode = process.poll()
if check and retcode:
raise CalledProcessError(retcode, process.args,
> output=stdout, stderr=stderr)
E subprocess.CalledProcessError: Command '['multiplanet', 'vspace.in']' returned non-zero exit status 1.
/usr/share/miniconda/envs/vplanet/lib/python3.7/subprocess.py:512: CalledProcessError
Check warning on line 0 in tests.Parallel.test_parallel
github-actions / Unit Test Results
test_parallel (tests.Parallel.test_parallel) failed
junit/test-results.xml
Raw output
def test_parallel():
# Get current path
path = pathlib.Path(__file__).parents[0].absolute()
sys.path.insert(1, str(path.parents[0]))
dir = (path / "MP_Parallel")
checkpoint = (path / ".MP_Parallel")
# Get the number of cores on the machine
cores = mp.cpu_count()
if cores == 1:
warnings.warn("There is only 1 core on the machine",stacklevel=3)
else:
# Remove anything from previous tests
if (dir).exists():
shutil.rmtree(dir)
if (checkpoint).exists():
os.remove(checkpoint)
# Run vspace
subprocess.check_output(["vspace", "vspace.in"], cwd=path)
# Run multi-planet
> subprocess.check_output(["multiplanet", "vspace.in"], cwd=path)
tests/Parallel/test_parallel.py:33:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/share/miniconda/envs/vplanet/lib/python3.7/subprocess.py:411: in check_output
**kwargs).stdout
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
input = None, capture_output = False, timeout = None, check = True
popenargs = (['multiplanet', 'vspace.in'],)
kwargs = {'cwd': PosixPath('/home/runner/work/multi-planet/multi-planet/tests/Parallel'), 'stdout': -1}
process = <subprocess.Popen object at 0x7f1ba54f1a90>, stdout = b''
stderr = None, retcode = 1
def run(*popenargs,
input=None, capture_output=False, timeout=None, check=False, **kwargs):
"""Run command with arguments and return a CompletedProcess instance.
The returned instance will have attributes args, returncode, stdout and
stderr. By default, stdout and stderr are not captured, and those attributes
will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them.
If check is True and the exit code was non-zero, it raises a
CalledProcessError. The CalledProcessError object will have the return code
in the returncode attribute, and output & stderr attributes if those streams
were captured.
If timeout is given, and the process takes too long, a TimeoutExpired
exception will be raised.
There is an optional argument "input", allowing you to
pass bytes or a string to the subprocess's stdin. If you use this argument
you may not also use the Popen constructor's "stdin" argument, as
it will be used internally.
By default, all communication is in bytes, and therefore any "input" should
be bytes, and the stdout and stderr will be bytes. If in text mode, any
"input" should be a string, and stdout and stderr will be strings decoded
according to locale encoding, or by "encoding" if set. Text mode is
triggered by setting any of text, encoding, errors or universal_newlines.
The other arguments are the same as for the Popen constructor.
"""
if input is not None:
if kwargs.get('stdin') is not None:
raise ValueError('stdin and input arguments may not both be used.')
kwargs['stdin'] = PIPE
if capture_output:
if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None:
raise ValueError('stdout and stderr arguments may not be used '
'with capture_output.')
kwargs['stdout'] = PIPE
kwargs['stderr'] = PIPE
with Popen(*popenargs, **kwargs) as process:
try:
stdout, stderr = process.communicate(input, timeout=timeout)
except TimeoutExpired as exc:
process.kill()
if _mswindows:
# Windows accumulates the output in a single blocking
# read() call run on child threads, with the timeout
# being done in a join() on those threads. communicate()
# _after_ kill() is required to collect that and add it
# to the exception.
exc.stdout, exc.stderr = process.communicate()
else:
# POSIX _communicate already populated the output so
# far into the TimeoutExpired exception.
process.wait()
raise
except: # Including KeyboardInterrupt, communicate handled that.
process.kill()
# We don't call process.wait() as .__exit__ does that for us.
raise
retcode = process.poll()
if check and retcode:
raise CalledProcessError(retcode, process.args,
> output=stdout, stderr=stderr)
E subprocess.CalledProcessError: Command '['multiplanet', 'vspace.in']' returned non-zero exit status 1.
/usr/share/miniconda/envs/vplanet/lib/python3.7/subprocess.py:512: CalledProcessError
Check warning on line 0 in tests.Serial.test_serial
github-actions / Unit Test Results
test_serial (tests.Serial.test_serial) failed
junit/test-results.xml
Raw output
def test_serial():
# Get current path
path = pathlib.Path(__file__).parents[0].absolute()
sys.path.insert(1, str(path.parents[0]))
dir = (path / "MP_Serial")
checkpoint = (path / ".MP_Serial")
# Remove anything from previous tests
if (dir).exists():
shutil.rmtree(dir)
if (checkpoint).exists():
os.remove(checkpoint)
# Run vspace
subprocess.check_output(["vspace", "vspace.in"], cwd=path)
# Run multi-planet
> subprocess.check_output(["multiplanet", "vspace.in", "-c", "1"], cwd=path)
tests/Serial/test_serial.py:26:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/share/miniconda/envs/vplanet/lib/python3.7/subprocess.py:411: in check_output
**kwargs).stdout
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
input = None, capture_output = False, timeout = None, check = True
popenargs = (['multiplanet', 'vspace.in', '-c', '1'],)
kwargs = {'cwd': PosixPath('/home/runner/work/multi-planet/multi-planet/tests/Serial'), 'stdout': -1}
process = <subprocess.Popen object at 0x7f1ba550de50>, stdout = b''
stderr = None, retcode = 1
def run(*popenargs,
input=None, capture_output=False, timeout=None, check=False, **kwargs):
"""Run command with arguments and return a CompletedProcess instance.
The returned instance will have attributes args, returncode, stdout and
stderr. By default, stdout and stderr are not captured, and those attributes
will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them.
If check is True and the exit code was non-zero, it raises a
CalledProcessError. The CalledProcessError object will have the return code
in the returncode attribute, and output & stderr attributes if those streams
were captured.
If timeout is given, and the process takes too long, a TimeoutExpired
exception will be raised.
There is an optional argument "input", allowing you to
pass bytes or a string to the subprocess's stdin. If you use this argument
you may not also use the Popen constructor's "stdin" argument, as
it will be used internally.
By default, all communication is in bytes, and therefore any "input" should
be bytes, and the stdout and stderr will be bytes. If in text mode, any
"input" should be a string, and stdout and stderr will be strings decoded
according to locale encoding, or by "encoding" if set. Text mode is
triggered by setting any of text, encoding, errors or universal_newlines.
The other arguments are the same as for the Popen constructor.
"""
if input is not None:
if kwargs.get('stdin') is not None:
raise ValueError('stdin and input arguments may not both be used.')
kwargs['stdin'] = PIPE
if capture_output:
if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None:
raise ValueError('stdout and stderr arguments may not be used '
'with capture_output.')
kwargs['stdout'] = PIPE
kwargs['stderr'] = PIPE
with Popen(*popenargs, **kwargs) as process:
try:
stdout, stderr = process.communicate(input, timeout=timeout)
except TimeoutExpired as exc:
process.kill()
if _mswindows:
# Windows accumulates the output in a single blocking
# read() call run on child threads, with the timeout
# being done in a join() on those threads. communicate()
# _after_ kill() is required to collect that and add it
# to the exception.
exc.stdout, exc.stderr = process.communicate()
else:
# POSIX _communicate already populated the output so
# far into the TimeoutExpired exception.
process.wait()
raise
except: # Including KeyboardInterrupt, communicate handled that.
process.kill()
# We don't call process.wait() as .__exit__ does that for us.
raise
retcode = process.poll()
if check and retcode:
raise CalledProcessError(retcode, process.args,
> output=stdout, stderr=stderr)
E subprocess.CalledProcessError: Command '['multiplanet', 'vspace.in', '-c', '1']' returned non-zero exit status 1.
/usr/share/miniconda/envs/vplanet/lib/python3.7/subprocess.py:512: CalledProcessError
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