chore: Build Models

models/schemas/urchin/AtlasModel.json

@@ -1 +1 @@
-{"$defs": {"Color": {"properties": {"r": {"maximum": 1.0, "minimum": 0.0, "title": "R", "type": "number"}, "g": {"maximum": 1.0, "minimum": 0.0, "title": "G", "type": "number"}, "b": {"maximum": 1.0, "minimum": 0.0, "title": "B", "type": "number"}, "a": {"default": 1, "maximum": 1.0, "minimum": 0.0, "title": "A", "type": "number"}}, "required": ["r", "g", "b"], "title": "Color", "type": "object"}, "ColormapModel": {"properties": {"Name": {"title": "Name", "type": "string"}, "Min": {"title": "Min", "type": "number"}, "Max": {"title": "Max", "type": "number"}}, "required": ["Name", "Min", "Max"], "title": "ColormapModel", "type": "object"}, "StructureModel": {"properties": {"Name": {"title": "Name", "type": "string"}, "Acronym": {"title": "Acronym", "type": "string"}, "AtlasId": {"title": "Atlasid", "type": "integer"}, "Color": {"$ref": "#/$defs/Color"}, "Visible": {"default": false, "title": "Visible", "type": "boolean"}, "ColorIntensity": {"default": -1, "title": "Colorintensity", "type": "number"}, "Side": {"default": 0, "title": "Side", "type": "integer"}, "Material": {"default": "default", "title": "Material", "type": "string"}}, "required": ["Name", "Acronym", "AtlasId", "Color"], "title": "StructureModel", "type": "object"}, "Vector3": {"properties": {"x": {"default": 0.0, "title": "X", "type": "number"}, "y": {"default": 0.0, "title": "Y", "type": "number"}, "z": {"default": 0.0, "title": "Z", "type": "number"}}, "title": "Vector3", "type": "object"}}, "properties": {"Name": {"title": "Name", "type": "string"}, "ReferenceCoord": {"allOf": [{"$ref": "#/$defs/Vector3"}], "default": null}, "Areas": {"items": {"$ref": "#/$defs/StructureModel"}, "title": "Areas", "type": "array"}, "Colormap": {"$ref": "#/$defs/ColormapModel"}}, "required": ["Name", "Areas", "Colormap"], "title": "AtlasModel", "type": "object"}
+{"$defs": {"Color": {"properties": {"r": {"maximum": 1.0, "minimum": 0.0, "title": "R", "type": "number"}, "g": {"maximum": 1.0, "minimum": 0.0, "title": "G", "type": "number"}, "b": {"maximum": 1.0, "minimum": 0.0, "title": "B", "type": "number"}, "a": {"default": 1, "maximum": 1.0, "minimum": 0.0, "title": "A", "type": "number"}}, "required": ["r", "g", "b"], "title": "Color", "type": "object"}, "ColormapModel": {"properties": {"Name": {"default": "", "title": "Name", "type": "string"}, "Min": {"default": 0, "title": "Min", "type": "number"}, "Max": {"default": 1, "title": "Max", "type": "number"}}, "title": "ColormapModel", "type": "object"}, "StructureModel": {"properties": {"Name": {"title": "Name", "type": "string"}, "Acronym": {"title": "Acronym", "type": "string"}, "AtlasId": {"title": "Atlasid", "type": "integer"}, "Color": {"$ref": "#/$defs/Color"}, "Visible": {"default": false, "title": "Visible", "type": "boolean"}, "ColorIntensity": {"default": -1, "title": "Colorintensity", "type": "number"}, "Side": {"default": 0, "title": "Side", "type": "integer"}, "Material": {"default": "default", "title": "Material", "type": "string"}}, "required": ["Name", "Acronym", "AtlasId", "Color"], "title": "StructureModel", "type": "object"}, "Vector3": {"properties": {"x": {"default": 0.0, "title": "X", "type": "number"}, "y": {"default": 0.0, "title": "Y", "type": "number"}, "z": {"default": 0.0, "title": "Z", "type": "number"}}, "title": "Vector3", "type": "object"}}, "properties": {"Name": {"title": "Name", "type": "string"}, "ReferenceCoord": {"allOf": [{"$ref": "#/$defs/Vector3"}], "default": null}, "Areas": {"items": {"$ref": "#/$defs/StructureModel"}, "title": "Areas", "type": "array"}, "Colormap": {"$ref": "#/$defs/ColormapModel"}}, "required": ["Name", "Areas", "Colormap"], "title": "AtlasModel", "type": "object"}

models/schemas/urchin/ColormapModel.json

@@ -1 +1 @@
-{"properties": {"Name": {"title": "Name", "type": "string"}, "Min": {"title": "Min", "type": "number"}, "Max": {"title": "Max", "type": "number"}}, "required": ["Name", "Min", "Max"], "title": "ColormapModel", "type": "object"}
+{"properties": {"Name": {"default": "", "title": "Name", "type": "string"}, "Min": {"default": 0, "title": "Min", "type": "number"}, "Max": {"default": 1, "title": "Max", "type": "number"}}, "title": "ColormapModel", "type": "object"}

src/vbl_aquarium/build.py

@@ -57,7 +57,7 @@ def remove_ignored_classes(module):
 
         # Move using statement to top
         output = "using System;\n" + output
-        
+
         if "using UnityEngine;" in output:
             output = "using UnityEngine;\n" + output.replace("using UnityEngine;", "")
 

src/vbl_aquarium/models/dock.py

@@ -13,9 +13,11 @@ class UploadModel(VBLBaseModel):
     data: str
     password: str
 
+
 class DownloadModel(VBLBaseModel):
     password: str
 
+
 # Models for sending save/load messages
 class SaveModel(VBLBaseModel):
     bucket: str

src/vbl_aquarium/models/urchin.py

@@ -68,18 +68,20 @@ class CameraMode(str, Enum):
     id: str
     type: str
     position: Vector3 = None
-    rotation: Vector3 = Vector3(0,0,0)
+    rotation: Vector3 = Vector3(0, 0, 0)
     target: Vector3 = None
     zoom: float = 16
-    pan: Vector2 = Vector2(0,0)
+    pan: Vector2 = Vector2(0, 0)
     mode: CameraMode = CameraMode.orthographic
     controllable: bool = True
     main: bool = False
 
+
 class CameraRotationModel(VBLBaseModel):
     start_rotation: Vector3
     end_rotation: Vector3
 
+
 # Individual mesh neuron
 
 
@@ -114,8 +116,9 @@ class ParticleGroupModel(VBLBaseModel):
 
 
 # Utilities
-
+
+
 class ColormapModel(VBLBaseModel):
-    name: str = ''
+    name: str = ""
     min: float = 0
-    max: float = 1
+    max: float = 1