build based on a100cae

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-06-13T13:22:10","documenter_version":"1.4.1"}}
+{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-06-13T13:42:22","documenter_version":"1.4.1"}}

dev/index.html

@@ -31,4 +31,4 @@
 # And making a little animation out of it:
 CairoMakie.record(f, "plant_animation.mp4", 1:120) do frame
     ax2.azimuth[] = 0.3π + 0.3 * sin(2π * frame / 120)
-end</code></pre></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="plot_diagram/makie_diagram/">Makie.jl »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Thursday 13 June 2024 13:22">Thursday 13 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+end</code></pre></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="plot_diagram/makie_diagram/">Makie.jl »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Thursday 13 June 2024 13:42">Thursday 13 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/makie_3d/index.html

@@ -3,25 +3,25 @@
 Page(exportable=true, offline=true)</code></pre><p>Then we can plot our interactive 3D plant:</p><pre><code class="language-julia hljs">using PlantGeom, WGLMakie
 mtg = read_opf(joinpath(dirname(dirname(pathof(PlantGeom))),&quot;test&quot;,&quot;files&quot;,&quot;simple_plant.opf&quot;))
 viz(mtg)</code></pre><div>
-  <div class="bonito-fragment" id="3dcc7f27-700f-4d8d-a484-6b6bbd6c1174" data-jscall-id="root">
+  <div class="bonito-fragment" id="016cca8f-dcfe-4872-8ad4-bb06369ae7da" data-jscall-id="root">
     <div>
       <script src="../../../../.julia/packages/Bonito/5OnJB/js_dependencies/Bonito.bundled.js" type="module"></script>
       <style></style>
       <div></div>
     </div>
     <div>
-      <script type="module">Bonito.lock_loading(() => Bonito.init_session('3dcc7f27-700f-4d8d-a484-6b6bbd6c1174', null, 'root'))</script>
+      <script type="module">Bonito.lock_loading(() => Bonito.init_session('016cca8f-dcfe-4872-8ad4-bb06369ae7da', null, 'root'))</script>
       <span></span>
     </div>
   </div>
-  <div class="bonito-fragment" id="294d0bbb-9bf3-4935-a4df-b52e37a3118a" data-jscall-id="subsession-application-dom">
+  <div class="bonito-fragment" id="1f529608-7cf2-43f9-8da7-552f69a2ef9b" data-jscall-id="subsession-application-dom">
     <div>
       <style></style>
       <div></div>
     </div>
     <div>
       <script type="module">    Bonito.lock_loading(() => {
-        return Bonito.fetch_binary('bonito/bin/a436b5d2bcfa64f63bd76d7f93923b15a8b3b6ab-3782213275089735877.bin').then(msgs=> Bonito.init_session('294d0bbb-9bf3-4935-a4df-b52e37a3118a', msgs, 'sub'));
+        return Bonito.fetch_binary('bonito/bin/2bd535223d779bce37e7df58ced88d86b5d30bfc-6249707418250663344.bin').then(msgs=> Bonito.init_session('1f529608-7cf2-43f9-8da7-552f69a2ef9b', msgs, 'sub'));
     })
 </script>
       <div style="width: 100%; height: 100%" data-jscall-id="1">
@@ -43,12 +43,12 @@
      width="50mm" height="25mm" viewBox="0 0 2 1" stroke="none"
      preserveAspectRatio="none" shape-rendering="crispEdges">
 <defs>
-    <pattern id="pat_1BK69p" width=".2" height=".2"
+    <pattern id="pat_e7GPl" width=".2" height=".2"
              patternUnits="userSpaceOnUse" >
         <path d="M.1,0h.1v.1h-.2v.1h.1z" fill="%23999" opacity=".5" />
     </pattern>
 </defs>
-<rect width="2" height="1" fill="url(%23pat_1BK69p)" />
+<rect width="2" height="1" fill="url(%23pat_e7GPl)" />
 <path d="M1,0v1h-1z" fill="%23594C00" />
 <path d="M0,0h1v1h-1z" fill="%23594C00" fill-opacity="1" />
 <path d="M2,0v1h-1z" fill="%231AB21A" />
@@ -67,4 +67,4 @@
 
 record(f, &quot;coffee_steps.mp4&quot;, 1:12, framerate=2) do timestep
     p.index[] = timestep
-end</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">&quot;coffee_steps.mp4&quot;</code></pre><p><video src="../coffee_steps.mp4" controls="true" title><a href="../coffee_steps.mp4"></a></video></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../plot_diagram/plots_diagram/">« Plots.jl</a><a class="docs-footer-nextpage" href="../API/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Thursday 13 June 2024 13:22">Thursday 13 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+end</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">&quot;coffee_steps.mp4&quot;</code></pre><p><video src="../coffee_steps.mp4" controls="true" title><a href="../coffee_steps.mp4"></a></video></p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../plot_diagram/plots_diagram/">« Plots.jl</a><a class="docs-footer-nextpage" href="../API/">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Thursday 13 June 2024 13:42">Thursday 13 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/plot_diagram/makie_diagram/index.html

@@ -5,4 +5,4 @@
 PlantGeom.coordinates!(opf, force = true)
 # Then we plot the MTG using the newly created ZZ attribute:
 diagram(opf, color = :YY)</code></pre><img src="8da0f475.svg" alt="Example block output"/><p>We can also color the edges differently, <em>e.g.</em> using the XX attribute computed using <code>coordinates!</code>:</p><pre><code class="language-julia hljs">PlantGeom.coordinates!(opf, force = true)
-diagram(opf, color = :YY, edge_color = :XX)</code></pre><img src="9ccb70a2.svg" alt="Example block output"/><p>Attributes used for coloring may have <code>missing</code> values. In this case you can choose their color using <code>color_missing</code>, <em>e.g.</em>:</p><pre><code class="language-julia hljs">diagram(opf, color = :Length, edge_color = :Width, color_missing = :red)</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../../">« Home</a><a class="docs-footer-nextpage" href="../plots_diagram/">Plots.jl »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Thursday 13 June 2024 13:22">Thursday 13 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+diagram(opf, color = :YY, edge_color = :XX)</code></pre><img src="9ccb70a2.svg" alt="Example block output"/><p>Attributes used for coloring may have <code>missing</code> values. In this case you can choose their color using <code>color_missing</code>, <em>e.g.</em>:</p><pre><code class="language-julia hljs">diagram(opf, color = :Length, edge_color = :Width, color_missing = :red)</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../../">« Home</a><a class="docs-footer-nextpage" href="../plots_diagram/">Plots.jl »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Thursday 13 June 2024 13:42">Thursday 13 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/plot_diagram/mtgplot.html

@@ -1,7 +1,7 @@
-<script src="https://cdn.plot.ly/plotly-2.6.3.min.js"></script>    <div id="26f9a4ee-7077-41f5-b5dc-ec16526f0e58" style="width:600px;height:400px;"></div>
+<script src="https://cdn.plot.ly/plotly-2.6.3.min.js"></script>    <div id="5e814b07-2e35-4152-ac4e-b8563a1f95d5" style="width:600px;height:400px;"></div>
     <script>
 
-    Plotly.newPlot('26f9a4ee-7077-41f5-b5dc-ec16526f0e58', [
+    Plotly.newPlot('5e814b07-2e35-4152-ac4e-b8563a1f95d5', [
     {
         "showlegend": false,
         "mode": "lines",

dev/plot_diagram/mtgplot3d.html

@@ -1,7 +1,7 @@
-<script src="https://cdn.plot.ly/plotly-2.6.3.min.js"></script>    <div id="c5d1a22a-de25-4733-89fc-6e8a511d84f3" style="width:600px;height:400px;"></div>
+<script src="https://cdn.plot.ly/plotly-2.6.3.min.js"></script>    <div id="20498ee6-25ee-4f75-83a4-6e416790b4e8" style="width:600px;height:400px;"></div>
     <script>
 
-    Plotly.newPlot('c5d1a22a-de25-4733-89fc-6e8a511d84f3', [
+    Plotly.newPlot('20498ee6-25ee-4f75-83a4-6e416790b4e8', [
     {
         "showlegend": false,
         "mode": "lines",

dev/plot_diagram/plots_diagram/index.html

@@ -3,4 +3,4 @@
 # import Pkg; Pkg.add("PlotlyJS")
 plotlyjs()
 opf = read_opf(joinpath(dirname(dirname(pathof(PlantGeom))),"test","files","simple_plant.opf"))
-plot(opf, node_color = :Length)</code></pre><object type="text/html" data="mtgplot.html" style="width:100%;height:500px;"></object><p>The default plot is a 2D projection of the MTG, but you can also get a 3D projection using the <code>mode</code> keyword argument:</p><pre><code class="language-julia hljs">plot(opf, node_color = :Length, mode = &quot;3d&quot;)</code></pre><object type="text/html" data="mtgplot3d.html" style="width:100%;height:500px;"></object></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../makie_diagram/">« Makie.jl</a><a class="docs-footer-nextpage" href="../../makie_3d/">3D Makie recipes »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Thursday 13 June 2024 13:22">Thursday 13 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+plot(opf, node_color = :Length)</code></pre><object type="text/html" data="mtgplot.html" style="width:100%;height:500px;"></object><p>The default plot is a 2D projection of the MTG, but you can also get a 3D projection using the <code>mode</code> keyword argument:</p><pre><code class="language-julia hljs">plot(opf, node_color = :Length, mode = &quot;3d&quot;)</code></pre><object type="text/html" data="mtgplot3d.html" style="width:100%;height:500px;"></object></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../makie_diagram/">« Makie.jl</a><a class="docs-footer-nextpage" href="../../makie_3d/">3D Makie recipes »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Thursday 13 June 2024 13:42">Thursday 13 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>