Update Manifest.toml #131
Annotations
10 errors, 2 warnings, and 1 notice
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@setup` block in src/index.md
```@setup animation
using PlantGeom, MultiScaleTreeGraph, CairoMakie
opf = read_opf(joinpath(dirname(dirname(pathof(PlantGeom))),"test","files","simple_plant.opf"))
# First, we compute the 3D coordinates for each node in the MTG:
transform!(opf, refmesh_to_mesh!)
# And compute the max z of each node based on their mesh:
transform!(opf, zmax => :z_node, ignore_nothing = true)
# Or the z coordinate of each vertez of each node mesh:
transform!(opf, :geometry => (x -> [i.coords[3] for i in x.mesh.vertices]) => :z_vertex, ignore_nothing = true)
# Then we make a Makie figure:
f = Figure()
ga = f[1, 1]
gb = f[1, 2]
ax1 = Axis(ga[1, 1])
ax2 = Axis3(gb[1, 1], aspect = :data, title = "3D representation (mesh)", elevation = 0.15π, azimuth = 0.3π)
hidedecorations!(ax2)
# We can make a diagram out of the MTG, and coloring using the z coordinates attribute:
diagram!(ax1, opf, color = :z_node)
hidedecorations!(ax1)
ax1.title = "MultiscaleTreeGraph diagram"
# And a 3d representation:
viz!(opf, color = :z_vertex)
# And making a little animation out of it:
CairoMakie.record(f, "plant_animation.mp4", 1:120) do frame
ax2.azimuth[] = 0.3π + 0.3 * sin(2π * frame / 120)
end
```
exception =
LoadError: UndefVarError: `diagram!` not defined
Stacktrace:
[1] top-level scope
@ string:22
[2] eval
@ ./boot.jl:385 [inlined]
[3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2076
[4] include_string (repeats 2 times)
@ ./loading.jl:2086 [inlined]
[5] #65
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:907 [inlined]
[6] cd(f::Documenter.var"#65#66"{Module, MarkdownAST.CodeBlock}, dir::String)
@ Base.Filesystem ./file.jl:112
[7] runner(::Type{Documenter.Expanders.SetupBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:906
in expression starting at string:22
|
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/plot_diagram/makie_diagram.md:14-18
```@example usewgl
using PlantGeom, CairoMakie
opf = read_opf(joinpath(dirname(dirname(pathof(PlantGeom))),"test","files","simple_plant.opf"))
diagram(opf)
```
exception =
UndefVarError: `diagram` not defined
Stacktrace:
[1] top-level scope
@ makie_diagram.md:17
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
|
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/plot_diagram/makie_diagram.md:22-24
```@example usewgl
diagram(opf, color = :palegreen1)
```
exception =
UndefVarError: `diagram` not defined
Stacktrace:
[1] top-level scope
@ makie_diagram.md:23
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
|
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/plot_diagram/makie_diagram.md:28-30
```@example usewgl
diagram(opf, color = :palegreen1, edge_color = :sienna)
```
exception =
UndefVarError: `diagram` not defined
Stacktrace:
[1] top-level scope
@ makie_diagram.md:29
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
|
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/plot_diagram/makie_diagram.md:34-39
```@example usewgl
# First, we compute "fake" coordinates for each node in the MTG (just for ploting):
PlantGeom.coordinates!(opf, force = true)
# Then we plot the MTG using the newly created ZZ attribute:
diagram(opf, color = :YY)
```
exception =
UndefVarError: `diagram` not defined
Stacktrace:
[1] top-level scope
@ makie_diagram.md:38
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
|
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/plot_diagram/makie_diagram.md:43-46
```@example usewgl
PlantGeom.coordinates!(opf, force = true)
diagram(opf, color = :YY, edge_color = :XX)
```
exception =
UndefVarError: `diagram` not defined
Stacktrace:
[1] top-level scope
@ makie_diagram.md:45
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
|
|
|
|
|
|
|
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
invalid local link/image: file does not exist in src/index.md
link =
@ast MarkdownAST.Image("plant_animation.mp4", "") do
MarkdownAST.Text("")
end
|
|
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, julia-actions/setup-julia@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
|
Run julia-actions/julia-buildpkg@v1
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache. To ignore, set input `ignore-no-cache: true`
|
Loading