PathDiscov 4.3.0

See the changelog

v4.3.0-beta.3

Small fix for format_iterative_blast_report.pl

v4.3.0-beta.2

Closes #274. Forcing cutadapt>=1.8.3 to fix cython setuptools issue

v4.3.0-beta.1

Documentation changes

See Changelog

Independent Pipeline Stages

Many changes to how the pipeline works

See Changelog for all changes

PathDiscov 4.2.3

Quick fix for make_summary and database documentation

See Changelog for more info

PathDiscov 4.2.2

Added parse_contigs that pulls out reads that mapped to contigs

See all changes in Changelog

PathDiscov 4.2.1

Pipeline is ready for PathoSphere and USAMRIID

See Changelog for all changes in 4.2.x branch

v4.2 Internal Testing

Changes can be found in the CHANGELOG.rst

@mmelendrez
@demis001
@bpfeffer
@akilianski

V4.1

Changelog

v4.1.0 Milestone