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Merge pull request #780 from USDA-SCINet/MoeRichert-USDA-patch-1
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Update 21-bioinformatics.md
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MoeRichert-USDA authored Nov 21, 2024
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Expand Up @@ -27,7 +27,7 @@ Steps to prepare for the tutorial session:

{: .copy-code }
```
salloc --reservation=forum-gpu -A scinet_workshop1 -t 03:30:00 -n 1 --mem 8G
salloc --reservation=forum-gpu -A scinet_workshop1 -t 03:30:00 -N 1 -c4 --mem 8G
```

1. **Create a workshop working directory** and copy the workshop materials into it by running the following commands. Note: you do not have to edit the commands with your username as it will be determined by the $USER variable.
Expand All @@ -46,4 +46,4 @@ cp -r /project/ai_forum/functional_annotation .

* [Identifying secreted proteins and predicting their subcellular localization](https://bioinformaticsworkbook.org/dataAnalysis/GenomeAnnotation/Secreted_Protein_Prediction_with_SignalP_and_TMHMM)
* [DeepGoPlus - Using AI to associate GO terms with novel proteins](https://bioinformaticsworkbook.org/dataAnalysis/GenomeAnnotation/DeepGoPlus_AI_Functional_Prediction_of_Proteins)
* [A ProtTrans Pipeline to Differentiate Transmembrane Domains from Other Proteins](https://bioinformaticsworkbook.org/dataAnalysis/GenomeAnnotation/Protein_Classification_with_ProtTrans)
* [A ProtTrans Pipeline to Differentiate Transmembrane Domains from Other Proteins](https://bioinformaticsworkbook.org/dataAnalysis/GenomeAnnotation/Protein_Classification_with_ProtTrans)

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