Update GitHub action for building website.

UMCarpentries · Nov 14, 2023 · 08ceb63 · 08ceb63
1 parent 148057f
commit 08ceb63
Showing 1 changed file with 37 additions and 37 deletions.
diff --git a/.github/workflows/website.yml b/.github/workflows/website.yml
@@ -31,61 +31,61 @@ jobs:
         run: |
           gem install github-pages bundler kramdown kramdown-parser-gfm
 
-      - name: Install Python modules
-        run: |
-          python3 -m pip install --upgrade pip setuptools wheel pyyaml==5.3.1 requests
+      # - name: Install Python modules
+      #   run: |
+      #     python3 -m pip install --upgrade pip setuptools wheel pyyaml==5.3.1 requests
 
       - name: Checkout the lesson
         uses: actions/checkout@master
         with:
           fetch-depth: 0
           ref: ${{ github.event.pull_request.head.sha }}
 
-      - name: Look for R-markdown files
-        id: check-rmd
-        run: |
-          echo "::set-output name=count::$(shopt -s nullglob; files=($(find . -iname '*.Rmd')); echo ${#files[@]})"
+      # - name: Look for R-markdown files
+      #   id: check-rmd
+      #   run: |
+      #     echo "::set-output name=count::$(shopt -s nullglob; files=($(find . -iname '*.Rmd')); echo ${#files[@]})"
 
       # - name: Set up R
       #   if: steps.check-rmd.outputs.count != 0
       #   uses: r-lib/actions/setup-r@master
       #   with:
       #     r-version: 'release'
 
-      - name: Restore R Cache
-        if: steps.check-rmd.outputs.count != 0
-        uses: actions/cache@v2
-        with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+      # - name: Restore R Cache
+      #   if: steps.check-rmd.outputs.count != 0
+      #   uses: actions/cache@v2
+      #   with:
+      #     path: ${{ env.R_LIBS_USER }}
+      #     key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+      #     restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
-      - name: Install needed packages
-        if: steps.check-rmd.outputs.count != 0
-        run: |
-          source('bin/dependencies.R')
-          install_required_packages()
-        shell: Rscript {0}
+      # - name: Install needed packages
+      #   if: steps.check-rmd.outputs.count != 0
+      #   run: |
+      #     source('bin/dependencies.R')
+      #     install_required_packages()
+      #   shell: Rscript {0}
 
-      - name: Query dependencies
-        if: steps.check-rmd.outputs.count != 0
-        run: |
-          source('bin/dependencies.R')
-          deps <- identify_dependencies()
-          create_description(deps)
-          use_bioc_repos()
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
+      # - name: Query dependencies
+      #   if: steps.check-rmd.outputs.count != 0
+      #   run: |
+      #     source('bin/dependencies.R')
+      #     deps <- identify_dependencies()
+      #     create_description(deps)
+      #     use_bioc_repos()
+      #     saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+      #     writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+      #   shell: Rscript {0}
 
 
-      - name: Install system dependencies for R packages
-        if: steps.check-rmd.outputs.count != 0
-        run: |
-          while read -r cmd
-          do
-            eval sudo $cmd || echo "Nothing to update"
-          done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")')
+      # - name: Install system dependencies for R packages
+      #   if: steps.check-rmd.outputs.count != 0
+      #   run: |
+      #     while read -r cmd
+      #     do
+      #       eval sudo $cmd || echo "Nothing to update"
+      #     done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")')
 
       - name: Render the markdown and confirm that the site can be built
         run: make site