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This repository has been archived by the owner on Jan 3, 2018. It is now read-only.

Releases: UCSC-Treehouse/rna_variant_call

RNA-Seq variant calling using Freebayes on a few hundred positions

25 Sep 22:20
@hbeale hbeale
v2.0
bb31022
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RNA-Seq variant calling using Freebayes on a few hundred positions Latest
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Merge pull request #1 from UCSC-Treehouse/v3-local-fasta

V3 local fasta
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RNA-Seq variant calling using GATK - very slow

25 Sep 22:09
@hbeale hbeale
v1.0
dcb8a96
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RNA-Seq variant calling using GATK - very slow

This uses code written by Linh following the GATK best practices. Because that is the most widely known approach to variant calling in RNA-Seq, we started with it. It is now obsolete. We found that Freebayes is more accurate and faster.

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