Update upload-artifact, download-artifact and checkout versions.
#439
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build and test | |
| # The main C++ CI is split into three steps: lint, build, and system tests. The | |
| # linting and building are independent but we make the build wait so as not to | |
| # waste resources compiling and testing a commit which doesn't pass the linter. | |
| # | |
| # System tests are slow and need input data. To save caching, network, and job | |
| # time we only run the full system tests on Ubuntu (although this can easily be | |
| # changed). | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| merge_group: | |
| workflow_dispatch: | |
| concurrency: | |
| # Skip intermediate builds: always. | |
| # Cancel intermediate builds: always. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| linting: | |
| name: Linting checks with pre-commit | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: ucl/composite-actions/pre-commit@v1 | |
| build: | |
| name: ${{ matrix.build_type }} build on ${{ matrix.os }} with build testing ${{ matrix.build_testing }} | |
| needs: linting | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, ubuntu-20.04, windows-latest, macos-latest] | |
| build_type: [Debug, Release] | |
| build_testing: [ON, OFF] | |
| exclude: | |
| # Currently our tests don't compile, and nor do we have a coverage | |
| # build in Windows so skip this. | |
| - os: windows-latest | |
| build_testing: ON | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up MATLAB | |
| uses: matlab-actions/[email protected] | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| # ------------------------------------------------------------------------------- | |
| # Ubuntu | |
| - name: Install dependencies for Ubuntu | |
| if: ${{ contains(matrix.os, 'ubuntu') }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libfftw3-dev libhdf5-dev libgomp1 python3 lcov | |
| # ------------------------------------------------------------------------------- | |
| # Windows | |
| - name: Install miniconda for Windows | |
| if: ${{ contains(matrix.os, 'windows') }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: 3.9 | |
| - name: Install dependencies for Windows | |
| if: ${{ contains(matrix.os, 'windows') }} | |
| shell: pwsh | |
| run: | | |
| conda install fftw --yes | |
| echo "FFTWDIR=C:\Miniconda\envs\test\Library" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append | |
| conda install hdf5 | |
| echo "HDF5_DIR=C:\Miniconda\envs\test\Library" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append | |
| # ------------------------------------------------------------------------------- | |
| # MacOS | |
| - name: Install dependencies for MacOS | |
| if: ${{ contains(matrix.os, 'macos') }} | |
| run: brew install fftw hdf5 | |
| - name: Fix omp headers not linked on MacOS | |
| if: ${{ contains(matrix.os, 'macos') }} | |
| run: | | |
| brew unlink libomp | |
| brew link --force libomp | |
| export DOMP_ROOT_MAC=-DOMP_ROOT=$(brew --prefix libomp) | |
| echo "DOMP_ROOT_MAC=${DOMP_ROOT_MAC}" >> $GITHUB_ENV | |
| # ------------------------------------------------------------------------------- | |
| - name: Create build environment | |
| run: | | |
| cmake -E make_directory ${{ runner.workspace }}/build | |
| - name: Compile with Werror on Ubuntu and MacOS (not Windows) | |
| if: ${{ !contains(matrix.os, 'windows') }} | |
| run: echo "CXXFLAGS=-Werror" >> $GITHUB_ENV | |
| - name: Configure TDMS | |
| shell: bash | |
| working-directory: ${{ runner.workspace }}/build | |
| run: | | |
| cmake ${GITHUB_WORKSPACE}/tdms -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \ | |
| -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \ | |
| -DBUILD_TESTING=${{ matrix.build_testing }} \ | |
| -DCODE_COVERAGE=${{ matrix.build_testing }} \ | |
| ${DOMP_ROOT_MAC} | |
| # This 👆 env variable only exists on MacOS builds to fix the OMP | |
| # homebrew/PATH problem. | |
| - name: Build TDMS | |
| working-directory: ${{ runner.workspace }}/build | |
| shell: bash | |
| run: | | |
| cmake --build . --config ${{ matrix.build_type }} | |
| - name: Smoke test the build on MacOS and Ubuntu | |
| if: ${{ !contains(matrix.os, 'windows') }} | |
| working-directory: ${{ runner.workspace }}/build | |
| shell: bash | |
| run: | | |
| ./tdms -h | |
| ./tdms --version | |
| - name: Smoke test the build on Windows | |
| if: ${{ contains(matrix.os, 'windows') }} | |
| working-directory: ${{ runner.workspace }}/build/${{ matrix.build_type }} | |
| shell: bash | |
| run: | | |
| export PATH=$(dirname "$(which MATLAB)")/win64/:$PATH | |
| export PATH=/c/Miniconda/envs/test/Library/bin/:$PATH | |
| ./tdms.exe -h | |
| ./tdms.exe --version | |
| # ------------------------------------------------------------------------------- | |
| # Unit tests | |
| - name: Produce MATLAB unit test data | |
| if: matrix.build_testing == 'ON' | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: cd('tdms/tests/unit/benchmark_scripts/'), setup_unit_tests | |
| - name: Produce hdf5 unit test data | |
| if: matrix.build_testing == 'ON' | |
| run: | | |
| pip install -r ${{ github.workspace }}/tdms/tests/requirements.txt | |
| python ${{ github.workspace }}/tdms/tests/unit/benchmark_scripts/create_hdf5_test_file.py | |
| - name: Run TDMS unit tests | |
| if: matrix.build_testing == 'ON' | |
| working-directory: ${{ runner.workspace }}/build | |
| shell: bash | |
| run: | | |
| export OMP_NUM_THREADS=1 | |
| ctest -C ${{ matrix.build_type }} --output-on-failure --extra-verbose | |
| - name: Run coverage analysis with lcov | |
| if: matrix.build_testing == 'ON' && contains(matrix.os, 'ubuntu') | |
| shell: bash | |
| # Create the coverage summary, filter out dependencies' coverage then | |
| # print human-readable summary in the build logs. | |
| run: | | |
| lcov --capture --directory ${{ runner.workspace }}/build/CMakeFiles/tdms_tests.dir/src --output-file coverage.info | |
| lcov --remove coverage.info '/usr/*' --output-file coverage.info | |
| lcov --remove coverage.info '*/_deps/*' --output-file coverage.info | |
| lcov --remove coverage.info '/Library/*' --output-file coverage.info | |
| lcov --remove coverage.info '/Applications/*' --output-file coverage.info | |
| lcov --list coverage.info | |
| - name: Upload coverage reports to Codecov | |
| if: matrix.build_testing == 'ON' && contains(matrix.os, 'ubuntu') | |
| uses: codecov/codecov-action@v3 | |
| # ------------------------------------------------------------------------------- | |
| # Upload build artefact for system tests | |
| - name: Tar the build result to maintain permissions | |
| # https://github.com/actions/upload-artifact#maintaining-file-permissions-and-case-sensitive-files | |
| # https://github.com/actions/upload-artifact/issues/38 | |
| if: ${{ !contains(matrix.os, 'windows') }} | |
| working-directory: ${{ runner.workspace }}/build | |
| run: tar -cvf tdms_build.tar tdms | |
| - name: Upload build results | |
| if: matrix.build_testing == 'OFF' && matrix.build_type == 'Debug' | |
| # If we use the build with testing ON, we'd also need to copy over (and | |
| # install) the libtdms.so so use the OFF build for simplicity. | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: tdms_build_${{ matrix.os }} | |
| path: ${{ runner.workspace }}/build/tdms_build.tar | |
| retention-days: 1 | |
| # Only run the slow system tests on Ubuntu. | |
| # Cache the input data to save network usage. | |
| system-tests: | |
| name: System tests ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| needs: build | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] #, macos-latest] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Set up MATLAB | |
| uses: matlab-actions/[email protected] | |
| - name: Install HDF5 libraries for Ubuntu | |
| if: ${{ contains(matrix.os, 'ubuntu') }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libhdf5-dev | |
| - name: Install Python dependencies | |
| shell: bash | |
| run: | | |
| python3 -m pip install -r ${GITHUB_WORKSPACE}/tdms/tests/requirements.txt | |
| - name: Download build result | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: tdms_build_${{ matrix.os }} | |
| path: ${{ runner.workspace }} | |
| - name: Untar | |
| working-directory: ${{ runner.workspace }} | |
| run: | | |
| tar -xvf tdms_build.tar | |
| - name: Setup cache of test data | |
| id: cache-test-data | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/tdms/tests/system/data | |
| key: test_data | |
| - name: Run TDMS system tests | |
| working-directory: ${{ runner.workspace }} | |
| shell: bash | |
| run: | | |
| export OMP_NUM_THREADS=2 | |
| pytest ${GITHUB_WORKSPACE}/tdms/tests/system/ --ignore=${GITHUB_WORKSPACE}/tdms/tests/system/test_regen.py -s -x |