Merge pull request #6 from TxWRI/load-report

Load report

R/metadata.R

@@ -24,3 +24,4 @@ write_spice(path = "data/Output/metadata")
 
 
 build_site("data/Output/metadata/dataspice.json")
+serve_site()

README.Rmd

@@ -1,14 +1,15 @@
 ---
 title: "Texas Coastal Nutrient Input Repository (Phase 1 - Lavaca Bay)"
-author: Michael Schramm - Texas Water Resources Institute, Research Specialist
 output: github_document
 ---
 
 ```{r setup, include=FALSE}
 knitr::opts_chunk$set(echo = TRUE)
 ```
 
-This is the analysis code and data for the Texas Coastal Nutrient Input Repository project. This project develops estimates of actual and flow-normalized daily nitrate (NO^3^-N) and total phosphorus (TP) watershed loads. Reports and publications are forthcoming.
+[![License: CC BY 4.0](https://img.shields.io/badge/License-CC%20BY%204.0-lightgrey.svg)](https://creativecommons.org/licenses/by/4.0/)
+
+This repository contains code and data for the Texas Coastal Nutrient Input Repository project. This project develops estimates of actual and flow-normalized daily nitrate (NO^3^-N) and total phosphorus (TP) watershed loads. Reports and publications are forthcoming.
 
 Data analysis and models were developed in R using the [renv](https://rstudio.github.io/renv/) and [targets](https://docs.ropensci.org/targets/) R packages to facilitate reproducibility. To reproduce this analysis clone the repository to your local machine, ensure both renv and targets are installed and open the project. The analysis can be reproduced using:
 
@@ -17,6 +18,11 @@ renv::restore()
 targets::tar_make()
 ```
 
+## Data Download
+
+Metadata and download links for nutrient loading data (csv files) are located here: https://txwri.github.io/lavaca-nutrients/
+
+
 ## Funding
 
 This project was funded by a Texas Coastal Management Program grant approved by the Texas Land Commissioner, providing financial assistance under the Coastal Zone Management Act of 1972, as amended, awarded by the National Oceanic and Atmospheric Administration (NOAA), Office for Coastal Management, pursuant to NOAA Award No. NA21NOS4190136. The views expressed herein are those of the author(s) and do not necessarily reflect the views of NOAA, the U.S. Department of Commerce, or any of their subagencies.

README.md

@@ -1,9 +1,11 @@
 Texas Coastal Nutrient Input Repository (Phase 1 - Lavaca Bay)
 ================
-Michael Schramm - Texas Water Resources Institute, Research Specialist
 
-This is the analysis code and data for the Texas Coastal Nutrient Input
-Repository project. This project develops estimates of actual and
+[![License: CC BY
+4.0](https://img.shields.io/badge/License-CC%20BY%204.0-lightgrey.svg)](https://creativecommons.org/licenses/by/4.0/)
+
+This repository contains code and data for the Texas Coastal Nutrient
+Input Repository project. This project develops estimates of actual and
 flow-normalized daily nitrate (NO<sup>3</sup>-N) and total phosphorus
 (TP) watershed loads. Reports and publications are forthcoming.
 
@@ -19,6 +21,11 @@ renv::restore()
 targets::tar_make()
 ```
 
+## Data Download
+
+Metadata and download links for nutrient loading data (csv files) are
+located here: <https://txwri.github.io/lavaca-nutrients/>
+
 ## Funding
 
 This project was funded by a Texas Coastal Management Program grant

data/Output/metadata/access.csv

@@ -1,13 +1,13 @@
 fileName,name,contentUrl,encodingFormat
-no3_annual_loads.csv,no3_annual_loads,NA,csv
-no3_annual_loads_flow_normalized.csv,no3_annual_loads_flow_normalized,NA,csv
-tp_annual_loads.csv,tp_annual_loads,NA,csv
-tp_annual_loads_flow_normalized.csv,tp_annual_loads_flow_normalized,NA,csv
-no3_daily_loads.csv,no3_daily_loads,NA,csv
-no3_daily_loads_flow_normalized.csv,no3_daily_loads_flow_normalized,NA,csv
-tp_daily_loads.csv,tp_daily_loads,NA,csv
-tp_daily_loads_flow_normalized.csv,tp_daily_loads_flow_normalized,NA,csv
-no3_monthly_loads.csv,no3_monthly_loads,NA,csv
-no3_monthly_loads_flow_normalized.csv,no3_monthly_loads_flow_normalized,NA,csv
-tp_monthly_loads.csv,tp_monthly_loads,NA,csv
-tp_monthly_loads_flow_normalized.csv,tp_monthly_loads_flow_normalized,NA,csv
+no3_annual_loads.csv,no3_annual_loads,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/no3_annual_loads.csv,csv
+no3_annual_loads_flow_normalized.csv,no3_annual_loads_flow_normalized,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/no3_annual_loads_flow_normalized.csv,csv
+tp_annual_loads.csv,tp_annual_loads,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/tp_annual_loads.csv,csv
+tp_annual_loads_flow_normalized.csv,tp_annual_loads_flow_normalized,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/tp_annual_loads_flow_normalized.csv,csv
+no3_daily_loads.csv,no3_daily_loads,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/no3_daily_loads.csv,csv
+no3_daily_loads_flow_normalized.csv,no3_daily_loads_flow_normalized,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/no3_daily_loads_flow_normalized.csv,csv
+tp_daily_loads.csv,tp_daily_loads,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/tp_daily_loads.csv,csv
+tp_daily_loads_flow_normalized.csv,tp_daily_loads_flow_normalized,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/tp_daily_loads_flow_normalized.csv,csv
+no3_monthly_loads.csv,no3_monthly_loads,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/no3_monthly_loads.csv,csv
+no3_monthly_loads_flow_normalized.csv,no3_monthly_loads_flow_normalized,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/no3_monthly_loads_flow_normalized.csv,csv
+tp_monthly_loads.csv,tp_monthly_loads,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/tp_monthly_loads.csv,csv
+tp_monthly_loads_flow_normalized.csv,tp_monthly_loads_flow_normalized,https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/tp_monthly_loads_flow_normalized.csv,csv

data/Output/metadata/dataspice.json

@@ -289,73 +289,73 @@
     {
       "type": "DataDownload",
       "name": "no3_annual_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/no3_annual_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "no3_annual_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/no3_annual_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_annual_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/tp_annual_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_annual_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/tp_annual_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "no3_daily_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/no3_daily_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "no3_daily_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/no3_daily_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_daily_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/tp_daily_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_daily_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/tp_daily_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "no3_monthly_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/no3_monthly_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "no3_monthly_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/no3_monthly_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_monthly_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/tp_monthly_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_monthly_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/tp_monthly_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     }
   ]

docs/index.html

@@ -294,73 +294,73 @@
     {
       "type": "DataDownload",
       "name": "no3_annual_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/no3_annual_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "no3_annual_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/no3_annual_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_annual_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/tp_annual_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_annual_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/tp_annual_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "no3_daily_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/no3_daily_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "no3_daily_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/no3_daily_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_daily_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/tp_daily_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_daily_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/tp_daily_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "no3_monthly_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/no3_monthly_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "no3_monthly_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/no3_monthly_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_monthly_loads",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/tp_monthly_loads.csv",
       "encodingFormat": "csv"
     },
     {
       "type": "DataDownload",
       "name": "tp_monthly_loads_flow_normalized",
-      "contentUrl": null,
+      "contentUrl": "https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/tp_monthly_loads_flow_normalized.csv",
       "encodingFormat": "csv"
     }
   ]
@@ -709,62 +709,62 @@ <h2>Distribution</h2>
         <tr>
           <td><code>no3_annual_loads</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/no3_annual_loads.csv">Download</a></td>
         </tr>
         <tr>
           <td><code>no3_annual_loads_flow_normalized</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/no3_annual_loads_flow_normalized.csv">Download</a></td>
         </tr>
         <tr>
           <td><code>tp_annual_loads</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/tp_annual_loads.csv">Download</a></td>
         </tr>
         <tr>
           <td><code>tp_annual_loads_flow_normalized</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/annual_loads/tp_annual_loads_flow_normalized.csv">Download</a></td>
         </tr>
         <tr>
           <td><code>no3_daily_loads</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/no3_daily_loads.csv">Download</a></td>
         </tr>
         <tr>
           <td><code>no3_daily_loads_flow_normalized</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/no3_daily_loads_flow_normalized.csv">Download</a></td>
         </tr>
         <tr>
           <td><code>tp_daily_loads</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/tp_daily_loads.csv">Download</a></td>
         </tr>
         <tr>
           <td><code>tp_daily_loads_flow_normalized</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/daily_loads/tp_daily_loads_flow_normalized.csv">Download</a></td>
         </tr>
         <tr>
           <td><code>no3_monthly_loads</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/no3_monthly_loads.csv">Download</a></td>
         </tr>
         <tr>
           <td><code>no3_monthly_loads_flow_normalized</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/no3_monthly_loads_flow_normalized.csv">Download</a></td>
         </tr>
         <tr>
           <td><code>tp_monthly_loads</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/tp_monthly_loads.csv">Download</a></td>
         </tr>
         <tr>
           <td><code>tp_monthly_loads_flow_normalized</code></td>
           <td><code>csv</code></td>
-          <td><a href="">Download</a></td>
+          <td><a href="https://github.com/txwri/lavaca-nutrients/blob/main/data/Output/monthly_loads/tp_monthly_loads_flow_normalized.csv">Download</a></td>
         </tr>
       </tbody>
     </table>