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Bump to Turing 0.35.3
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penelopeysm committed Dec 6, 2024
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Showing 1 changed file with 69 additions and 74 deletions.
143 changes: 69 additions & 74 deletions Manifest.toml
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# This file is machine-generated - editing it directly is not advised

julia_version = "1.11.1"
julia_version = "1.11.2"
manifest_format = "2.0"
project_hash = "53e97ef537fe2e98eecbe367cd36c4bc6a201e3e"

Expand Down Expand Up @@ -39,10 +39,10 @@ uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001"
version = "5.6.0"

[[deps.AbstractPPL]]
deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"]
git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef"
deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "Random"]
git-tree-sha1 = "bdb19638644450ee1b0fd63740381835069d34b9"
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version = "0.9.0"

[[deps.AbstractTrees]]
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Expand All @@ -51,9 +51,9 @@ version = "0.4.5"

[[deps.Accessors]]
deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"]
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git-tree-sha1 = "96bed9b1b57cf750cca50c311a197e306816a1cc"
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[deps.Accessors.extensions]
AccessorsAxisKeysExt = "AxisKeys"
Expand Down Expand Up @@ -202,9 +202,9 @@ version = "7.17.1"

[[deps.ArrayLayouts]]
deps = ["FillArrays", "LinearAlgebra"]
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[deps.ArrayLayouts.extensions]
Expand Down Expand Up @@ -244,9 +244,9 @@ version = "0.4.7"

[[deps.BandedMatrices]]
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[deps.BandedMatrices.extensions]
Expand Down Expand Up @@ -290,29 +290,22 @@ uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
version = "1.5.0"

[[deps.Bijectors]]
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deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"]
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BijectorsEnzymeCoreExt = "EnzymeCore"
BijectorsForwardDiffExt = "ForwardDiff"
BijectorsLazyArraysExt = "LazyArrays"
BijectorsMooncakeExt = "Mooncake"
BijectorsReverseDiffExt = "ReverseDiff"
BijectorsTapirExt = "Tapir"
BijectorsTrackerExt = "Tracker"
BijectorsZygoteExt = "Zygote"

[deps.Bijectors.weakdeps]
DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c"
ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02"
ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b"
Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"

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Expand Down Expand Up @@ -735,21 +728,21 @@ version = "7.15.0"

[[deps.DifferentiationInterface]]
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DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore"
DifferentiationInterfaceDiffractorExt = "Diffractor"
DifferentiationInterfaceEnzymeExt = "Enzyme"
DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"]
DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation"
DifferentiationInterfaceFiniteDiffExt = "FiniteDiff"
DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences"
DifferentiationInterfaceForwardDiffExt = "ForwardDiff"
DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"]
DifferentiationInterfaceMooncakeExt = "Mooncake"
DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff"
DifferentiationInterfaceReverseDiffExt = "ReverseDiff"
DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"]
DifferentiationInterfaceSparseArraysExt = "SparseArrays"
DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings"
DifferentiationInterfaceStaticArraysExt = "StaticArrays"
Expand All @@ -759,8 +752,10 @@ version = "0.6.24"

[deps.DifferentiationInterface.weakdeps]
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DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5"
Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c"
Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be"
FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41"
FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000"
Expand Down Expand Up @@ -845,10 +840,10 @@ uuid = "bbc10e6e-7c05-544b-b16e-64fede858acb"
version = "3.4.7"

[[deps.DynamicPPL]]
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[deps.DynamicPPL.extensions]
Expand All @@ -871,10 +866,10 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
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[[deps.Enzyme]]
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[deps.Enzyme.extensions]
EnzymeBFloat16sExt = "BFloat16s"
Expand All @@ -891,25 +886,25 @@ version = "0.13.17"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"

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[[deps.Enzyme_jll]]
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[[deps.ExceptionUnwrapping]]
deps = ["Test"]
Expand All @@ -919,9 +914,9 @@ version = "0.1.11"

[[deps.Expat_jll]]
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[[deps.ExponentialUtilities]]
deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"]
Expand Down Expand Up @@ -1217,15 +1212,15 @@ version = "1.0.1"

[[deps.GR]]
deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"]
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[[deps.GenericSchur]]
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Expand All @@ -1241,9 +1236,9 @@ version = "0.21.0+0"

[[deps.Glib_jll]]
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[[deps.Graphite2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -1282,9 +1277,9 @@ version = "1.14.2+1"

[[deps.HTTP]]
deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
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Expand Down Expand Up @@ -1587,9 +1582,9 @@ version = "0.1.17"

[[deps.LazyArrays]]
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[deps.LazyArrays.extensions]
LazyArraysBandedMatricesExt = "BandedMatrices"
Expand Down Expand Up @@ -1938,15 +1933,15 @@ version = "1.3.7"

[[deps.MCMCChains]]
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[[deps.MKL_jll]]
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Expand Down Expand Up @@ -2155,9 +2150,9 @@ version = "0.8.1"

[[deps.Mooncake]]
deps = ["ADTypes", "ChainRules", "ChainRulesCore", "DiffRules", "DiffTests", "ExprTools", "FunctionWrappers", "Graphs", "InteractiveUtils", "LinearAlgebra", "MistyClosures", "Random", "Setfield", "Test"]
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[deps.Mooncake.extensions]
MooncakeAllocCheckExt = "AllocCheck"
Expand Down Expand Up @@ -2341,9 +2336,9 @@ uuid = "510215fc-4207-5dde-b226-833fc4488ee2"
version = "0.5.5"

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[deps.OffsetArrays.extensions]
Expand Down Expand Up @@ -2703,9 +2698,9 @@ version = "2.8.1"

[[deps.Pathfinder]]
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[deps.Pathfinder.extensions]
Expand Down Expand Up @@ -3084,9 +3079,9 @@ version = "0.1.1"

[[deps.SciMLBase]]
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[deps.SciMLBase.extensions]
SciMLBaseChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -3483,9 +3478,9 @@ version = "5.2.3+0"

[[deps.SymbolicIndexingInterface]]
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[[deps.TOML]]
deps = ["Dates"]
Expand Down Expand Up @@ -3568,9 +3563,9 @@ weakdeps = ["RecipesBase"]

[[deps.TimerOutputs]]
deps = ["ExprTools", "Printf"]
git-tree-sha1 = "3a6f063d690135f5c1ba351412c82bae4d1402bf"
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Expand Down Expand Up @@ -3634,9 +3629,9 @@ version = "1.6.0"

[[deps.Turing]]
deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
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[deps.Turing.extensions]
Expand All @@ -3645,9 +3640,9 @@ weakdeps = ["DynamicHMC", "Optim"]

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git-tree-sha1 = "b512c8ab665cb6396f19533b6960cc3e0fc4d556"
git-tree-sha1 = "2421fcac17d8f62c02e9c95c60968faa72ef95d8"
uuid = "0db1332d-5c25-4deb-809f-459bc696f94f"
version = "0.5.5"
version = "0.5.6"

[deps.TuringBenchmarking.extensions]
TuringBenchmarkingBridgeStanExt = "BridgeStan"
Expand Down Expand Up @@ -3844,9 +3839,9 @@ version = "1.1.4+1"

[[deps.Xorg_libXext_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"]
git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85"
git-tree-sha1 = "d7155fea91a4123ef59f42c4afb5ab3b4ca95058"
uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3"
version = "1.3.6+0"
version = "1.3.6+1"

[[deps.Xorg_libXfixes_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"]
Expand Down

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