Multiple knowledge level and agent type

[cbizon]

Here is an edge from aragorn (which uses reasoner-pydantic to merge edges). It contains two attributes with type agent_type and two with knowledge_level. This is disallowed per https://github.com/NCATSTranslator/ReasonerAPI/blob/master/ImplementationGuidance/Specifications/knowledge_level_agent_type_specification.md

I notice that the text-mining-kp is being referenced via two paths (service provider and robokop) so I suspect that this is an edge merging edge case :)

{
    "subject": "CHEBI:6129",
    "object": "NCBIGene:8653",
    "predicate": "biolink:affects",
    "sources": [
        {
            "resource_id": "infores:text-mining-provider-targeted",
            "resource_role": "primary_knowledge_source",
            "upstream_resource_ids": []
        },
        {
            "resource_id": "infores:service-provider-trapi",
            "resource_role": "aggregator_knowledge_source",
            "upstream_resource_ids": [
                "infores:text-mining-provider-targeted"
            ]
        },
        {
            "resource_id": "infores:aragorn",
            "resource_role": "aggregator_knowledge_source",
            "upstream_resource_ids": [
                "infores:automat-robokop",
                "infores:service-provider-trapi"
            ]
        },
        {
            "resource_id": "infores:automat-robokop",
            "resource_role": "aggregator_knowledge_source",
            "upstream_resource_ids": [
                "infores:text-mining-provider-targeted"
            ]
        }
    ],
    "qualifiers": [
        {
            "qualifier_type_id": "biolink:object_aspect_qualifier",
            "qualifier_value": "activity_or_abundance"
        },
        {
            "qualifier_type_id": "biolink:qualified_predicate",
            "qualifier_value": "biolink:causes"
        },
        {
            "qualifier_type_id": "biolink:object_direction_qualifier",
            "qualifier_value": "decreased"
        }
    ],
    "attributes": [
        {
            "attribute_type_id": "biolink:knowledge_level",
            "value": "not_provided",
            "value_type_id": "EDAM:data_0006",
            "original_attribute_name": "knowledge_level"
        },
        {
            "attribute_type_id": "biolink:publications",
            "value": [
                "PMC:5522823"
            ],
            "value_type_id": "linkml:Uriorcurie",
            "original_attribute_name": "publications"
        },
        {
            "attribute_type_id": "biolink:primary_knowledge_source",
            "value": "infores:text-mining-provider-targeted",
            "value_type_id": "biolink:InformationResource",
            "attribute_source": "infores:text-mining-provider-targeted"
        },
        {
            "attribute_type_id": "biolink:evidence_count",
            "value": 1,
            "value_type_id": "biolink:EvidenceCount",
            "attribute_source": "infores:text-mining-provider-targeted"
        },
        {
            "attribute_type_id": "biolink:publications",
            "value": [
                "PMC:5522823"
            ],
            "value_type_id": "biolink:Uriorcurie",
            "attribute_source": "infores:pubmed"
        },
        {
            "attribute_type_id": "biolink:agent_type",
            "value": "text_mining_agent",
            "value_type_id": "EDAM:data_0006",
            "original_attribute_name": "agent_type"
        },
        {
            "attribute_type_id": "biolink:has_supporting_study_result",
            "value": "tmkp:4ebdb684feb412402016a32105f08073f8c308e6d3257ad7609c64fe468427a8",
            "value_type_id": "biolink:TextMiningResult",
            "value_url": "https://tmui.text-mining-kp.org/evidence/4ebdb684feb412402016a32105f08073f8c308e6d3257ad7609c64fe468427a8",
            "attribute_source": "infores:text-mining-provider-targeted",
            "attributes": [
                {
                    "attribute_type_id": "biolink:supporting_text",
                    "value": "Ketorolac salt is a newly discovered DDX3 inhibitor to treat oral cancer",
                    "value_type_id": "EDAM:data_3671",
                    "attribute_source": "infores:text-mining-provider-targeted"
                },
                {
                    "attribute_type_id": "biolink:publications",
                    "value": "PMC:5522823",
                    "value_type_id": "biolink:Uriorcurie",
                    "value_url": "https://pubmed.ncbi.nlm.nih.gov/PMC5522823/",
                    "attribute_source": "infores:pubmed"
                },
                {
                    "attribute_type_id": "biolink:supporting_text_located_in",
                    "value": "reference",
                    "value_type_id": "IAO_0000314",
                    "attribute_source": "infores:pubmed"
                },
                {
                    "attribute_type_id": "biolink:extraction_confidence_score",
                    "value": 0.99971837,
                    "value_type_id": "EDAM:data_1772",
                    "attribute_source": "infores:text-mining-provider-targeted"
                },
                {
                    "attribute_type_id": "biolink:subject_location_in_text",
                    "value": "0|9",
                    "value_type_id": "SIO:001056",
                    "attribute_source": "infores:text-mining-provider-targeted"
                },
                {
                    "attribute_type_id": "biolink:object_location_in_text",
                    "value": "37|41",
                    "value_type_id": "SIO:001056",
                    "attribute_source": "infores:text-mining-provider-targeted "
                },
                {
                    "attribute_type_id": "biolink:supporting_document_year",
                    "value": 2017,
                    "value_type_id": "UO:0000036",
                    "attribute_source": "infores:pubmed"
                }
            ]
        },
        {
            "attribute_type_id": "biolink:knowledge_level",
            "value": "not_provided"
        },
        {
            "attribute_type_id": "biolink:Attribute",
            "value": 0.99971837,
            "value_type_id": "EDAM:data_0006",
            "original_attribute_name": "tmkp_confidence_score"
        },
        {
            "attribute_type_id": "biolink:extraction_confidence_score",
            "value": 0.99971837,
            "value_type_id": "biolink:ConfidenceLevel",
            "attribute_source": "infores:text-mining-provider-targeted"
        },
        {
            "attribute_type_id": "biolink:Attribute",
            "value": "Ketorolac salt is a newly discovered DDX3 inhibitor to treat oral cancer|NA",
            "value_type_id": "EDAM:data_0006",
            "original_attribute_name": "sentences"
        },
        {
            "attribute_type_id": "biolink:supporting_data_source",
            "value": "infores:pubmed",
            "value_type_id": "biolink:InformationResource",
            "attribute_source": "infores:text-mining-provider-targeted"
        },
        {
            "attribute_type_id": "biolink:Attribute",
            "value": [
                "tmkp:fc2a3fd2a9f2f06ea19ea2ff2cd24a10a9e49b828803de90bd2c42e9f5dcab48",
                "tmkp:4ebdb684feb412402016a32105f08073f8c308e6d3257ad7609c64fe468427a8"
            ],
            "value_type_id": "EDAM:data_0006",
            "original_attribute_name": "tmkp_ids"
        },
        {
            "attribute_type_id": "biolink:agent_type",
            "value": "text_mining_agent"
        }
    ]
}

[cbizon]

See NCATSTranslator/Feedback#811 for the original issue.