adding prod back in and fixing bug for running on all environments

TranslatorSRI · Jun 28, 2024 · 8e0f7ff · 8e0f7ff
1 parent b0ee58f
commit 8e0f7ff
Show file tree

Hide file tree

Showing 2 changed files with 29 additions and 2 deletions.
diff --git a/deploy/deployment_spec.yaml b/deploy/deployment_spec.yaml
@@ -82,6 +82,33 @@ deployments:
       string-db: 8921aec4382a896c
       ubergraph: 470b86cde433f1fb
       viral-proteome: 365c51354d2ed0cc
+  - deployment_environment: prod
+    automat_url: https://automat.transltr.io/
+    plater_version: v1.6.5
+    trapi_version: 1.5.0
+    platers:
+      binding-db: 57e22a8a314b0df8
+      cam-kp: dfdb15b2ecef5629
+      ctd: 8b5f74462c4179ca
+      drugcentral: 33887d252c2a0de4
+      genome-alliance: 85a6ce01fb7d2cbe
+      gtex: 982fac378b629570
+      gtopdb: b0048e5f6f14c0f7
+      gwas-catalog: 1fe140b41b7349e8
+      hetio: 35c7d6be215e8cc9
+      hgnc: 012197dd15067551
+      hmdb: 9bf6cb5142d79b7f
+      human-goa: 73059966f266f5a8
+      icees-kg: "4-11-2024"
+      intact: 2a79dda9d5bc2312
+      monarch-kg: "2024-04-18"
+      panther: 04726ca2b1148f20
+      pharos: 727a90a7317f97a8
+      reactome: 59c5f5859ca31e58
+      robokopkg: c5ec1f282158182f
+      string-db: 8921aec4382a896c
+      ubergraph: 470b86cde433f1fb
+      viral-proteome: 365c51354d2ed0cc
   - deployment_environment: robokop
     automat_url: https://robokop-automat.apps.renci.org/
     plater_version: v1.6.5

diff --git a/deploy/validate.py b/deploy/validate.py
@@ -145,14 +145,14 @@ def validate_plater(url, expected_version, expected_plater_version, expected_tra
 
 
 def run_validation(deployments_to_validate=None):
-    deployments_to_validate = deployments_to_validate if deployments_to_validate else []
+    deployments_to_validate = deployments_to_validate if deployments_to_validate else None
     everything_is_good = True
     graph_deployment_spec_path = os.path.join(os.path.dirname(__file__), 'deployment_spec.yaml')
     with open(graph_deployment_spec_path) as graph_deployment_spec_file:
         deployment_spec = yaml.safe_load(graph_deployment_spec_file)
         plater_validation_results = {}
         for deployment in deployment_spec['deployments']:
-            if deployment['deployment_environment'] not in deployments_to_validate:
+            if deployments_to_validate and deployment['deployment_environment'] not in deployments_to_validate:
                 print(f"Skipping deployment environment {deployment['deployment_environment']} ({deployment['automat_url']})")
                 continue
             else: