Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add sssom #145

Draft
wants to merge 16 commits into
base: master
Choose a base branch
from
Draft

Add sssom #145

wants to merge 16 commits into from

Conversation

jdr0887
Copy link
Collaborator

@jdr0887 jdr0887 commented Aug 17, 2022

This includes both the Rust code to convert *.sssom.tsv data into the legacy format and a new function to parse the *.sssom.tsv directly using the sssom library.

@jdr0887 jdr0887 requested a review from cbizon August 17, 2022 21:47
@jdr0887
Copy link
Collaborator Author

jdr0887 commented Aug 24, 2022

This now build via Docker

@jdr0887 jdr0887 requested a review from cbizon August 24, 2022 18:33
@matentzn
Copy link

Tiny comment, you can use the sssom validator to check whether outputted sssom is correctly formatted see here for an example of that: https://github.com/mapping-commons/mh_mapping_initiative/pull/24/files#diff-76ed074a9305c04054cdebb9e9aad2d818052b07091de1f20cad0bbac34ffb52R20

Your currently committed sssom example is conformant to a quite old version of sssom, while you include a more recent (maybe update that as well) sssom toolkit.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants