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@Topp-Roots-Lab

Topp-Roots-Lab

A collection of projects designed to analyze phenotypic plant data by the Topp lab at the Donald Danforth Plant Science Center.

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  1. rsa-gui rsa-gui Public

    User-controlled pipeline for analyzing plant root system architecture

    Java 3 4

  2. Grapevine-inflorescence-architecture Grapevine-inflorescence-architecture Public archive

    MATLAB 3 1

  3. 3d-root-crown-analysis-pipeline 3d-root-crown-analysis-pipeline Public

    A pipeline to process 3-D volumes (.raw) of maize root crowns. Also known as XRCAP.

    Python 3 1

  4. rsa-tools rsa-tools Public archive

    External tools used by the GUI for analyzing plant root system architecture

    C++ 1

  5. Gia3D Gia3D Public

    Root3D Skeleton Traits by Olga Symonova. Also known as "skel" or "Skeleton".

    C++ 1

  6. 3D-Sorghum-Inflorescence 3D-Sorghum-Inflorescence Public archive

    C++ 1 1

Repositories

Showing 10 of 16 repositories
  • Topp-Roots-Lab.github.io Public

    Lab website

    Topp-Roots-Lab/Topp-Roots-Lab.github.io’s past year of commit activity
    HTML 1 1 0 0 Updated Jun 21, 2024
  • rsa-gui Public

    User-controlled pipeline for analyzing plant root system architecture

    Topp-Roots-Lab/rsa-gui’s past year of commit activity
    Java 3 4 5 1 Updated Apr 16, 2024
  • 3d-root-crown-analysis-pipeline Public

    A pipeline to process 3-D volumes (.raw) of maize root crowns. Also known as XRCAP.

    Topp-Roots-Lab/3d-root-crown-analysis-pipeline’s past year of commit activity
    Python 3 1 16 (4 issues need help) 0 Updated Feb 23, 2024
  • TopoRoot_v2 Public Forked from Jurwen/TopoRoot_v2
    Topp-Roots-Lab/TopoRoot_v2’s past year of commit activity
    C++ 0 2 0 0 Updated Oct 9, 2023
  • taghelper Public

    Python scripts that allow synching of fieldbooks, the tagdb, and barcode strings.

    Topp-Roots-Lab/taghelper’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Aug 4, 2023
  • soil-analysis-scripts Public

    Hub for various scripts involved in quantifying soil metrics

    Topp-Roots-Lab/soil-analysis-scripts’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jun 29, 2023
  • python-rawtools Public

    Utility library for consuming and manipulating x-ray volume data in .raw format.

    Topp-Roots-Lab/python-rawtools’s past year of commit activity
    Python 0 BSD-3-Clause 2 6 (1 issue needs help) 1 Updated Mar 21, 2023
  • TopoRoot Public Forked from danzeng8/TopoRoot
    Topp-Roots-Lab/TopoRoot’s past year of commit activity
    HTML 1 5 0 0 Updated Mar 7, 2023
  • 3D_reconstruction Public

    Algorithm for 3d reconstruction from rotational image sequence

    Topp-Roots-Lab/3D_reconstruction’s past year of commit activity
    C++ 0 3 1 (1 issue needs help) 0 Updated Mar 7, 2023
  • Gia3D Public

    Root3D Skeleton Traits by Olga Symonova. Also known as "skel" or "Skeleton".

    Topp-Roots-Lab/Gia3D’s past year of commit activity
    C++ 1 0 1 0 Updated Mar 7, 2023
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