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Add SC-53334 repro to regression tests
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/** | ||
* @file aggregates.c | ||
* | ||
* @section LICENSE | ||
* | ||
* The MIT License | ||
* | ||
* @copyright Copyright (c) 2018-2022 TileDB, Inc. | ||
* | ||
* Permission is hereby granted, free of charge, to any person obtaining a copy | ||
* of this software and associated documentation files (the "Software"), to deal | ||
* in the Software without restriction, including without limitation the rights | ||
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | ||
* copies of the Software, and to permit persons to whom the Software is | ||
* furnished to do so, subject to the following conditions: | ||
* | ||
* The above copyright notice and this permission notice shall be included in | ||
* all copies or substantial portions of the Software. | ||
* | ||
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | ||
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | ||
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE | ||
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | ||
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | ||
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN | ||
* THE SOFTWARE. | ||
* | ||
* @section DESCRIPTION | ||
* | ||
* When run, this program will create a simple 2D sparse array, write some data | ||
* to it in global order, and read the data back with aggregates. | ||
*/ | ||
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#include <stdio.h> | ||
#include <stdlib.h> | ||
#include <tiledb/tiledb.h> | ||
#include <tiledb/tiledb_experimental.h> | ||
#include <tiledb/tiledb> | ||
#include <vector> | ||
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#include <catch2/catch_template_test_macros.hpp> | ||
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using namespace tiledb; | ||
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typedef char min_type; | ||
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template <tiledb_datatype_t attribute_type> | ||
struct AttributeTraits; | ||
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template <> | ||
struct AttributeTraits<TILEDB_UINT8> { | ||
typedef uint8_t value_type; | ||
}; | ||
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template <> | ||
struct AttributeTraits<TILEDB_STRING_ASCII> { | ||
typedef char value_type; | ||
}; | ||
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template <tiledb_datatype_t attribute_datatype> | ||
struct MyArray { | ||
using AttributeValueType = | ||
typename AttributeTraits<attribute_datatype>::value_type; | ||
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static void create_array(Context& ctx, const char* array_name) { | ||
// The array will be 4x4 with dimensions "rows" and "cols", with domain | ||
// [1,4]. | ||
auto rows = Dimension::create<int32_t>(ctx, "rows", {{1, 4}}, 4); | ||
auto cols = Dimension::create<int32_t>(ctx, "columns", {{1, 4}}, 4); | ||
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// Create domain | ||
Domain domain(ctx); | ||
domain.add_dimension(rows); | ||
domain.add_dimension(cols); | ||
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// Create a single attribute "a" so each (i,j) cell can store a character | ||
Attribute a(ctx, "a", attribute_datatype); | ||
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// Create array schema | ||
ArraySchema schema(ctx, TILEDB_SPARSE); | ||
schema.set_domain(domain); | ||
schema.set_cell_order(TILEDB_ROW_MAJOR); | ||
schema.set_tile_order(TILEDB_ROW_MAJOR); | ||
schema.add_attribute(a); | ||
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// Create array | ||
Array::create(array_name, schema); | ||
} | ||
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static void write_array(Context& ctx, const char* array_name) { | ||
// Open array for writing | ||
Array array(ctx, array_name, TILEDB_WRITE); | ||
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// Data | ||
std::vector<int32_t> rows = { | ||
1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4}; | ||
std::vector<int32_t> cols = { | ||
1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4}; | ||
std::vector<AttributeValueType> atts = { | ||
'a', | ||
'b', | ||
'c', | ||
'd', | ||
'e', | ||
'f', | ||
'g', | ||
'h', | ||
'i', | ||
'j', | ||
'k', | ||
'l', | ||
'm', | ||
'n', | ||
'o', | ||
'p'}; | ||
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Query query(ctx, array); | ||
query.set_data_buffer("rows", rows) | ||
.set_data_buffer("columns", cols) | ||
.set_data_buffer("a", atts); | ||
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query.submit(); | ||
array.close(); | ||
} | ||
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static AttributeValueType query_min(Context& ctx, const char* array_name) { | ||
// note, use C API because the CPP API doesn't seem to have Min yet | ||
Array array(ctx, array_name, TILEDB_READ); | ||
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Query query(ctx, array); | ||
query.set_layout(TILEDB_UNORDERED); | ||
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// use C API to request min() as it does not appear to be in CPP API yet | ||
{ | ||
auto c_ctx = ctx.ptr().get(); | ||
auto c_query = query.ptr().get(); | ||
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tiledb_query_channel_t* default_channel; | ||
tiledb_query_get_default_channel(c_ctx, c_query, &default_channel); | ||
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const tiledb_channel_operator_t* operator_min; | ||
tiledb_channel_operator_min_get(c_ctx, &operator_min); | ||
tiledb_channel_operation_t* min_a; | ||
tiledb_create_unary_aggregate(c_ctx, c_query, operator_min, "a", &min_a); | ||
tiledb_channel_apply_aggregate(c_ctx, default_channel, "Min", min_a); | ||
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tiledb_error_t* maybe_err = nullptr; | ||
const int rc = tiledb_ctx_get_last_error(c_ctx, &maybe_err); | ||
REQUIRE(rc == TILEDB_OK); | ||
REQUIRE(maybe_err == nullptr); | ||
} | ||
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std::vector<AttributeValueType> min(1); | ||
query.set_data_buffer("Min", min); | ||
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query.submit(); | ||
query.finalize(); | ||
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return min[0]; | ||
} | ||
}; | ||
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bool array_exists(Context& ctx, const char* uri) { | ||
auto object = tiledb::Object::object(ctx, uri); | ||
return (object.type() == tiledb::Object::Type::Array); | ||
} | ||
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TEST_CASE("SC-53334 min single value UINT8 works", "[bug][sc-53334]") { | ||
using MyArray = MyArray<TILEDB_UINT8>; | ||
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Context ctx; | ||
std::string uri("sc-53334-uint8"); | ||
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if (!array_exists(ctx, uri.c_str())) { | ||
MyArray::create_array(ctx, uri.c_str()); | ||
MyArray::write_array(ctx, uri.c_str()); | ||
} | ||
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const uint8_t min = MyArray::query_min(ctx, uri.c_str()); | ||
REQUIRE(min == 'a'); | ||
} | ||
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TEST_CASE( | ||
"SC-53334 min single value STRING_ASCII does not work", | ||
"[regression][bug][sc-53334]") { | ||
using MyArray = MyArray<TILEDB_STRING_ASCII>; | ||
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Context ctx; | ||
std::string uri("sc-53334-string-ascii"); | ||
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if (!array_exists(ctx, uri.c_str())) { | ||
MyArray::create_array(ctx, uri.c_str()); | ||
MyArray::write_array(ctx, uri.c_str()); | ||
} | ||
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/* | ||
* This throws an exception instead of returning the correct result "a". | ||
* | ||
* "OutputBufferValidator: Aggregate fixed size buffer should be for one | ||
* element" This happens because the Min/Max ops are specialized to do | ||
* std::string as their internal result buffer, but we are looking for a | ||
* single `char` result. | ||
*/ | ||
const char min = MyArray::query_min(ctx, uri.c_str()); | ||
REQUIRE(min == 'a'); | ||
} |