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1. ChromHL ChromHL Public

   Predicting microdomain formation in chromatin from the DNA sequence and protein concentrations

   MATLAB 1

2. TFaffinity TFaffinity Public

   Code for aggregating transcription factor binding affinity profiles in regions defined by a bed file

   MATLAB 1

3. cfDNAtools cfDNAtools Public

   cfDNAtools - scripts for cfDNA processing

   Perl 1

4. MatrixProteinBinding MatrixProteinBinding Public

   Uses the transfer matrix method to compute protein binding at single base pair resolution including competition from nucleosomes and DNA methylation if provided

   MATLAB