Pinned Loading

1. hicrep hicrep Public

   R package to evaluate the reproducibility of Hi-C data

   R 25 4

2. Deeprimer Deeprimer Public

   A Python library to predict the performance of designed primer sets for amplicon sequencing; implements tensorflow and sklearn; performs K-mer sequence analysis, motif discovery, local alignment

   Python 2

3. Hi-C-analysis-pipeline Hi-C-analysis-pipeline Public

   perform alignment, quality control, generating Hi-C intra-chromosome matrix, normalization, calling Hi-C peaks, hierarchical clustering between cell lineages

   Perl

4. mTDR mTDR Public

   R package to comprehensively evaluate the reproducibility of chromatin profiling sequencing data

   R 1

5. ChIP-seq-QC-pipeline ChIP-seq-QC-pipeline Public

   perform intersecting, peak calling, run IDR, compute QC metrics

6. AdRoit AdRoit Public

   Accurate and robust method to infer complex transcriptome composition

   Jupyter Notebook