update path

.github/workflows/publish.yaml

@@ -13,8 +13,6 @@ jobs:
  steps:
  - name: Checkout Quarto Book
  uses: actions/checkout@v4
- with:
- path: main
 
  - name: Checkout Pythia Book
  uses: actions/checkout@v4
@@ -25,20 +23,29 @@ jobs:
  - name: Set up Quarto
  uses: quarto-dev/quarto-actions/setup@v2
 
+ - name: Restore Cache Jupyter Kernels
+ id: cache-jupyter-kernels-restore
+ uses: actions/cache/restore@v4
+ with:
+ path: ~/.local/share/jupyter/kernels
+ key: ${{ runner.os }}-jupyter-${{ hashFiles('chapters/*.yml') }}
+
  - name: Render and Publish
  id: setup-python
  uses: quarto-dev/quarto-actions/publish@v2
  with:
- path: main
  target: gh-pages
  env:
  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+ - run: echo $(ls ~/.local/share/jupyter/kernels)
 
  - name: Cache Jupyter Kernels
- uses: actions/cache@v3
+ id: cache-jupyter-kernels-save
+ uses: actions/cache/save@v4
  with:
  path: ~/.local/share/jupyter/kernels
- key: ${{ runner.os }}-python-${{ steps.setup-python.outputs.python-version }}-jupyter-${{ hashFiles('chapters/*.yml') }}
+ key: ${{ steps.cache-jupyter-kernels-restore.outputs.cache-primary-key }}
 
  # - name: Cache Binder Build on mybinder.org
  # uses: jupyterhub/repo2docker-action@master
@@ -47,15 +54,15 @@ jobs:
  # MYBINDERORG_TAG: ${{ github.event.ref }} 
  # REPO2DOCKER_EXTRA_ARGS: --subdir notebooks
 
+ - run: echo $(ls $(pwd)/notebooks)
+
  - name: Commit Files
  if: github.ref == 'refs/heads/main'
  run: |
- cp main/notebooks/*.ipynb eo-datascience-cookbook/notebooks/*.ipynb
- cd eo-datascience-cookbook
+ NB_PATH=($(git diff --name-only ${{ github.event.before }} ${{ github.sha }} | grep '[.]ipynb$'))
  git config --local user.email "[email protected]"
  git config --local user.name "GitHub Action"
- git add notebooks/*.ipynb
- git commit -m "Quarto output"
+ git commit ${RMD_PATH[*]/.ipynb} -m "Quarto output"
 
  - name: Push Commit
  if: github.ref == 'refs/heads/main'

.gitignore

@@ -2,5 +2,4 @@
 .env
 /.quarto/
 /_book/
-/data/
-/**/*.ipynb
+/data/

Makefile

@@ -2,6 +2,7 @@
 SHELL = /bin/bash
 .PHONY: help clean environment kernel post-render data
 YML = $(wildcard chapters/*.yml)
+QMD = $(wildcard chapters/*.qmd)
 REQ = $(basename $(notdir $(YML)))
 CONDA_ENV_DIR := $(foreach i,$(REQ),$(shell conda info --base)/envs/$(i))
 KERNEL_DIR := $(foreach i,$(REQ),$(shell jupyter --data-dir)/kernels/$(i))
@@ -34,7 +35,9 @@ kernel: $(KERNEL_DIR)
  @echo -e "conda jupyter kernel is ready."
 
 post-render:
+ for i in $(QMD); do quarto convert $$i; done
  - mv chapters/*.ipynb notebooks/ >/dev/null 2>&1
+ - for f in chapters/*.quarto_ipynb ; do mv -- "$f" "${f%.quarto_ipynb}.ipynb" >/dev/null 2>&1; done
  cp Makefile notebooks/
 
 data:

chapters/01_classification.qmd

@@ -6,7 +6,6 @@ jupyter:
  name: "01_classification"
  language: "python"
  display_name: "01_classification"
-keep-ipynb: true
 ---
 
 ```{python}

chapters/02_floodmapping.qmd

@@ -6,8 +6,6 @@ jupyter:
  name: "02_floodmapping"
  language: "python"
  display_name: "02_floodmapping"
-keep-ipynb: true
-code-fold: true
 ---
 
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