This repository contains code to analyze the post-ablation target data.
This script can be used to investigate the mirror positioning and step sizing variation for ablated targets that have been repeatedly ablated in the same pattern.
This script takes the ablation measurements from ImageJ and the and determines the step sizes and conversion factor between mirror and target coordinates.
This script is used to generate plots for various targets and studies.
This script finds the edges of the laser TTL and Arduino pulse TTL and calculates the time between the two edges. It makes a histogram of the delay times and calculates some basic stats. The delay calculation is written in a for loop that looks through a directory to get all the scope files. You should put all relevant scope data files into a repository and then use the os.chdir('path') command to point the script to the directory with the data. The script then saves the plot to that folder, to see the file name enter it into the plot.savefig('filename') command located near the end of the script.
This script simply plots the scope data. Use the full file path to the file in the variable called filepath.
This script calculates the FWHM of a pulse and the rise and fall times. The rise time and fall time condition can be defined in the crit variable. This number gives the percent of full height to consider as the start and end of the rise or fall. For example: setting crit = 0.10 will give you the time it takes for the pulse to go from 10% to 90% of it's full height. The script then plots the pulse, vertical lines where the crit cutoffs are and horizontal lines at the voltage corresponding to the crit values for both rise and fall times. The plot is then saved to the same folder as the data file.