cell_count.csv & types.csv

[happywt]

Hello, I want to use CellViT to train CoNSeP dataset. I have successfully converted 1000x1000 png image and.mat format annotation data from the original dataset into 256x256 png image and.nPY annotation data.
But now I have a difficulty, I don't know how to get cell_count.csv information and types.csv information for each image.
Can you tell me how to get the above two information? Your answer is very important to me, thank you!

[FabianHoerst]

Hello,

sorry for the late reply. Maybe it is the best to check out the files from the PanNuke dataset and create it on your own or write an own dataloader/trainer without the information needed.

Best, Fabian