CoNSeP embedding analysis code

[EmanuelSoda]

Hi, first of all, thanks for this amazing tool!

I am training a CellViT instance on another dataset and I would like to perform a cell embedding analysis as you have done in your manuscript with CoNSeP. Unfortunately, looking at the provided code in the repo, I wasn't able to find the relative code. Since I am fairly new to this field could you please provide the CoNSeP analysis so that I'll try to adapt my dataset?

Thanks in advance

[florianbuettner]

I agree with Emanuel, it would be helpful if you could briefly show how you assign the embeddings to the predicted instances.