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Human 1.19 deprecated since this does not follow the guidelines #819

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wants to merge 149 commits into from
Closed

Human 1.19 deprecated since this does not follow the guidelines #819

wants to merge 149 commits into from

Commits on May 21, 2023

  1. fix: Fixed a bug in importYaml.m for when you have an old MATLAB vers… 

    …ion. I don't think that code had ever been run, it was just not right.
    @johan-gson
    johan-gson committed May 21, 2023
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  2. feat: Added gene essentiality prediction from DepMap data. The code c… 

    …urrently only processes the model available in the repo, and does not compare with any older model version. The code is however prepared for comparing versions. Currently, it only processes 2 out of 40 chunks of data, this is to be changed when we want to run a full evaluation with 891 cell lines.
    @johan-gson
    johan-gson committed May 21, 2023
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Commits on May 22, 2023

  1. Update code/DepMapGeneEss/Instructions.txt 

    Co-authored-by: Mihail Anton <[email protected]>
    @johan-gson @mihai-sysbio
    johan-gson and mihai-sysbio authored May 22, 2023
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  2. Update code/DepMapGeneEss/PrepDepMapData.m 

    Co-authored-by: Mihail Anton <[email protected]>
    @johan-gson @mihai-sysbio
    johan-gson and mihai-sysbio authored May 22, 2023
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  3. Update code/DepMapGeneEss/enrichment_test.m 

    Co-authored-by: Mihail Anton <[email protected]>
    @johan-gson @mihai-sysbio
    johan-gson and mihai-sysbio authored May 22, 2023
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Commits on May 24, 2023

  1. Update code/DepMapGeneEss/ConvertGeneEssInputData.R 

    Co-authored-by: Mihail Anton <[email protected]>
    @johan-gson @mihai-sysbio
    johan-gson and mihai-sysbio authored May 24, 2023
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  2. Update code/DepMapGeneEss/PlotGeneEss.R 

    Co-authored-by: Mihail Anton <[email protected]>
    @johan-gson @mihai-sysbio
    johan-gson and mihai-sysbio authored May 24, 2023
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Commits on Jul 6, 2023

  1. refactor: move the gene essentiality instrucitons to Human-GEM-guide

    @mihai-sysbio
    mihai-sysbio committed Jul 6, 2023
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Commits on Nov 23, 2023

  1. Feat: create metabolites_SMILES_inchi.tsv 

    Added metabolite SMILES and Inchi Information
    @JHL-452b
    JHL-452b committed Nov 23, 2023
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Commits on Dec 6, 2023

  1. fix: remove MAR03748 and MAR03780 and merge annotations in reactions.… 

    …tsv into MAR06416/7 and MAR06419/20
    @Devlin-Moyer
    Devlin-Moyer committed Dec 6, 2023
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Commits on Dec 8, 2023

  1. fix: update GPRs of MAR06416, MAR06419, MAR06421, and MAR06523 and re… 

    …move TMEM91 from the model
    @Devlin-Moyer
    Devlin-Moyer committed Dec 8, 2023
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  2. fix: remove MAR02532 and MAR02534

    @Devlin-Moyer
    Devlin-Moyer committed Dec 8, 2023
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  3. feat: add references for MAR06523

    @Devlin-Moyer
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  4. fix: remove MAR06329 for being redundant with MAR03149 + MAR03150 + M… 

    …AR03151 + MAR03153
    @Devlin-Moyer
    Devlin-Moyer committed Dec 8, 2023
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  5. fix: remove MAR06283 for being redundant with MAR03156 + MAR03157 + M… 

    …AR03158 + MAR03160
    @Devlin-Moyer
    Devlin-Moyer committed Dec 8, 2023
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  6. fix: remove MAR06279 for being redundant with MAR03157 + MAR03158 + M… 

    …AR03160
    @Devlin-Moyer
    Devlin-Moyer committed Dec 8, 2023
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  7. fix: remove MAR05449 for being redundant with MAR03163 + MAR03164 + M… 

    …AR03166 + MAR03885
    @Devlin-Moyer
    Devlin-Moyer committed Dec 8, 2023
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  8. fix: remove MAR01009 for being redundant with MAR03885 and MAR03149,5… 

    …0,51,53,56,57,58,60,63,64,66
    @Devlin-Moyer
    Devlin-Moyer committed Dec 8, 2023
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  9. fix: removed MAR03422

    @Devlin-Moyer
    Devlin-Moyer committed Dec 8, 2023
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Commits on Dec 9, 2023

  1. feat: added missing thiamine and lipoyl intermediates in BCKDH and 2-… 

    …OADH reactions
    @Devlin-Moyer
    Devlin-Moyer committed Dec 9, 2023
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Commits on Dec 10, 2023

  1. feat: added thiamine-dependent decarboxylation reactions for BCKDH an… 

    …d 2-OADH reactions and thiamine-to-lipoyl transfer for 2-OADH
    @Devlin-Moyer
    Devlin-Moyer committed Dec 10, 2023
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  2. fix: adjusted existing BCKDH and 2-OADH reactions to connect to new t… 

    …hiamine-dependent steps
    @Devlin-Moyer
    Devlin-Moyer committed Dec 10, 2023
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  3. fix: removed extra space that made YAML validation fail

    @Devlin-Moyer
    Devlin-Moyer committed Dec 10, 2023
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  4. Merge pull request #743 from SysBioChalmers/fix/BCKDH_duplicates 

    Fix Duplicate BCKDH Reactions
    @haowang-bioinfo
    haowang-bioinfo authored Dec 10, 2023
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  5. Merge branch 'develop' into fix/remove_MAR03422

    @haowang-bioinfo
    haowang-bioinfo authored Dec 10, 2023
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  6. Merge branch 'develop' into fix/BCKDH_genes

    @Devlin-Moyer
    Devlin-Moyer authored Dec 10, 2023
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  7. fix: removed MAM02158m, MAM02158n, and MAM02986n

    @Devlin-Moyer
    Devlin-Moyer committed Dec 10, 2023
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  8. Merge pull request #752 from SysBioChalmers/fix/remove_MAR03422 

    Remove MAR03422
    @haowang-bioinfo
    haowang-bioinfo authored Dec 10, 2023
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  9. fix: GPRs for MAR03269 and MAR03380

    @Devlin-Moyer
    Devlin-Moyer committed Dec 10, 2023
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Commits on Dec 13, 2023

  1. fix: remove MAR00789

    @Devlin-Moyer
    Devlin-Moyer committed Dec 13, 2023
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  2. fix: remove MAR03426 and merge annotations in reactions.tsv with reac… 

    …tions it duplicated
    @Devlin-Moyer
    Devlin-Moyer committed Dec 13, 2023
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  3. feat: add code to report Perox genes from beta-oxidation GPRs in mito

    @haowang-bioinfo
    haowang-bioinfo committed Dec 13, 2023
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  4. Merge pull request #760 from SysBioChalmers/fix/MAR03269_MAR03380 

    Fix GPRs for MAR03269 and MAR03380
    @haowang-bioinfo
    haowang-bioinfo authored Dec 13, 2023
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  5. fix-GPR: remove ENSG00000115425 from MAR02028

    @haowang-bioinfo
    haowang-bioinfo committed Dec 13, 2023
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  6. fix-GPR: remove ENSG00000115425 from MAR02148

    @haowang-bioinfo
    haowang-bioinfo committed Dec 13, 2023
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  7. fix-GPR: remove ENSG00000115425 from MAR02149

    @haowang-bioinfo
    haowang-bioinfo committed Dec 13, 2023
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  8. fix-GPR: remove ENSG00000115425 from MAR02187

    @haowang-bioinfo
    haowang-bioinfo committed Dec 13, 2023
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  9. fix-GPR: remove ENSG00000115425 from MAR02207

    @haowang-bioinfo
    haowang-bioinfo committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. chore: merge in latest develop branch

    @Devlin-Moyer
    Devlin-Moyer committed Dec 14, 2023
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  2. fix: merged in latest develop branch and corrected weird annotation i… 

    …nconsistencies in reactions.tsv
    @Devlin-Moyer
    Devlin-Moyer committed Dec 14, 2023
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  3. chore: merge in latest develop branch

    @Devlin-Moyer
    Devlin-Moyer committed Dec 14, 2023
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  4. fix-GPR: remove ENSG00000113790 from GPRs of b-oxidation rxns in mito 

    - remove ENSG00000113790 from GPRs of MAR03297, MAR03374, MAR03378, MAR03379
    @haowang-bioinfo
    haowang-bioinfo committed Dec 14, 2023
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Commits on Dec 16, 2023

  1. fix-GPR: remove ENSG00000060971 from MAR02381

    @haowang-bioinfo
    haowang-bioinfo committed Dec 16, 2023
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  2. fix: remove accidentally introduced typo

    @haowang-bioinfo
    haowang-bioinfo committed Dec 16, 2023
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Commits on Dec 18, 2023

  1. fix: removed MAR00965

    @Devlin-Moyer
    Devlin-Moyer committed Dec 18, 2023
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  2. fix: corrected GPR of MAR00970

    @Devlin-Moyer
    Devlin-Moyer committed Dec 18, 2023
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  3. Merge pull request #750 from SysBioChalmers/fix/BCKDH_genes 

    Fix BCKDH Genes and Remove Mito & Nuc Thiocyanate <-> Hypothiocyanite Reactions
    @haowang-bioinfo
    haowang-bioinfo authored Dec 18, 2023
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  4. Merge pull request #768 from SysBioChalmers/fix/linolenoyl_beta_oxida… 

    …tion

Remove Duplicate Linolenoyl-CoA Beta-Oxidation Reactions
    @haowang-bioinfo
    haowang-bioinfo authored Dec 18, 2023
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  5. Merge pull request #770 from SysBioChalmers/removePeroGenesFromBetaox… 

    …idationGPRsInMito

fix: remove genes only expressed in peroxisome from beta-oxidation reactions in mitochondria
    @haowang-bioinfo
    haowang-bioinfo authored Dec 18, 2023
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  6. chore: resolved merge conflicts with latest develop branch

    @Devlin-Moyer
    Devlin-Moyer committed Dec 18, 2023
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Commits on Dec 22, 2023

  1. doc: update rxnRetired column for MAR03160

    @haowang-bioinfo
    haowang-bioinfo committed Dec 22, 2023
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Commits on Dec 23, 2023

  1. Merge pull request #751 from SysBioChalmers/fix/octanoyl_beta_ox_dupes 

    Fix Duplicate Octanoyl-CoA Beta-Oxidation Reactions
    @haowang-bioinfo
    haowang-bioinfo authored Dec 23, 2023
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Commits on Dec 26, 2023

  1. fix: remove MAR03322 and MAR03296

    @haowang-bioinfo
    haowang-bioinfo committed Dec 26, 2023
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  2. fix-gpr: remove DECR2 from mitochondria beta-oxidation reactions 

    set GPRs of MAR01176, MAR01181, MAR01218, MAR01222, MAR MAR03446, and MAR03457 to ENSG00000104325
    @haowang-bioinfo
    haowang-bioinfo committed Dec 26, 2023
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  3. fix-gpr: remove DECR1 from peroxisome beta-oxidation reactions 

    Set the GPRs of MAR01297, MAR03461, and MAR03471 to ENSG00000242612
    @haowang-bioinfo
    haowang-bioinfo committed Dec 26, 2023
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  4. doc: update rxnRetired column to genes.tsv

    @haowang-bioinfo
    haowang-bioinfo committed Dec 26, 2023
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  5. fix: remove MAR04005 due to wrong compartment assignment

    @haowang-bioinfo
    haowang-bioinfo committed Dec 26, 2023
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  6. doc: sync MAR04005 removal to TSV files

    @haowang-bioinfo
    haowang-bioinfo committed Dec 26, 2023
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  7. fix: remove MAR05019 for being a duplicate of MAR03142+MAR03143

    @Devlin-Moyer
    Devlin-Moyer committed Dec 26, 2023
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  8. fix: remove MAR04967 for being a duplicate of MAR03143+MAR03144+MAR03146

    @Devlin-Moyer
    Devlin-Moyer committed Dec 26, 2023
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  9. fix: remove MAR05024 for being a duplicate of MAR03142+MAR03143+MAR03… 

    …144+MAR03146
    @Devlin-Moyer
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  10. fix-met: remove MAM00678c and MAM03035c

    @haowang-bioinfo
    haowang-bioinfo committed Dec 26, 2023
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  11. fix: removed EHHADH from the GPR of MAR03288

    @Devlin-Moyer
    Devlin-Moyer committed Dec 26, 2023
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Commits on Dec 27, 2023

  1. Merge pull request #788 from SysBioChalmers/fix/DECR1DECR2_rxnsGPRs 

    fix: revise rxns and GPRs associated with DECR1 and DECR2
    @haowang-bioinfo
    haowang-bioinfo authored Dec 27, 2023
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  2. Merge branch 'develop' into fix/decanoyl_beta_ox_dupes

    @haowang-bioinfo
    haowang-bioinfo authored Dec 27, 2023
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  3. Merge pull request #789 from SysBioChalmers/fix/decanoyl_beta_ox_dupes 

    Remove Duplicate Decanoyl-CoA to Octanoyl-CoA Beta-Oxidation Reactions
    @haowang-bioinfo
    haowang-bioinfo authored Dec 27, 2023
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Commits on Dec 28, 2023

  1. fix: remove MAR05187 for duplicating MAR03486+MAR03386

    @Devlin-Moyer
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  2. fix: remove MAR05186 for misrepresenting catalytic activity of ALDH2A2

    @Devlin-Moyer
    Devlin-Moyer committed Dec 28, 2023
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  3. fix-gpr: MAR03386 and MAR03486

    @Devlin-Moyer
    Devlin-Moyer committed Dec 28, 2023
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  4. fix: remove KRTAP11-1 for not being an enzyme

    @Devlin-Moyer
    Devlin-Moyer committed Dec 28, 2023
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  5. fix: remove MAR05358 for duplicating MAR03452+MAR03453+MAR03454+MAR03455

    @Devlin-Moyer
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  6. fix: remove MAR05195 for duplicating MAR03456

    @Devlin-Moyer
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  7. fix: remove MAR05302 for duplicating MAR03457

    @Devlin-Moyer
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  8. fix: remove MAR05229 for duplicating MAR03458

    @Devlin-Moyer
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  9. fix: remove MAR05208 for duplicating MAR03281+MAR03282+MAR03283

    @Devlin-Moyer
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  10. fix: remove MAR05356 for duplicating MAR03275+MAR03277+MAR03278+MAR03279

    @Devlin-Moyer
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  11. fix: remove MAR05191 for duplicating MAR03280+MAR03281+MAR03282+MAR03283

    @Devlin-Moyer
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  12. fix: remove MAR05123 for duplicating MAR03284+MAR03285+MAR03286+MAR03287

    @Devlin-Moyer
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  13. fix: remove MAR05075 for duplicating MAR03288

    @Devlin-Moyer
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  14. fix: remove MAR05072 for duplicating MAR03290+MAR03292+MAR03293

    @Devlin-Moyer
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  15. fix: replaced MAM03274m with MAM00091m in MAR05360

    @Devlin-Moyer
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  16. fix: removed MAM03274m for duplicating MAM00091m

    @Devlin-Moyer
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  17. fix: removed MAM03653m for duplicating MAM00072m

    @Devlin-Moyer
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  18. fix: removed MAM03221m for duplicating MAM00089m

    @Devlin-Moyer
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  19. fix: removed MAM03182m for duplicating MAM03009m

    @Devlin-Moyer
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  20. fix: removed MAM03978m for duplicating MAM01576m

    @Devlin-Moyer
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  21. fix: removed MAM03203m for duplicating MAM01575m

    @Devlin-Moyer
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  22. fix: removed MAM02698m for duplicating MAM03021m

    @Devlin-Moyer
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  23. fix: removed MAM03650m for duplicating MAM01577m

    @Devlin-Moyer
    Devlin-Moyer committed Dec 28, 2023
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  24. chore: merge in latest develop branch

    @Devlin-Moyer
    Devlin-Moyer committed Dec 28, 2023
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Commits on Dec 31, 2023

  1. fix a small type in rxn ID

    @feiranl
    feiranl committed Dec 31, 2023
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  2. fix: standardized format of new GPR for MAR00970

    @Devlin-Moyer
    Devlin-Moyer committed Dec 31, 2023
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Commits on Jan 2, 2024

  1. Merge pull request #790 from SysBioChalmers/fix/MAR03288_GPR 

    Remove EHHADH from the GPR of MAR03288
    @feiranl
    feiranl authored Jan 2, 2024
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  2. fix: consistent formatting of names of thiamine conjugates

    @Devlin-Moyer
    Devlin-Moyer committed Jan 2, 2024
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  3. fix: added MAM20081m to MAR03800 as a product

    @Devlin-Moyer
    Devlin-Moyer committed Jan 2, 2024
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  4. fix: typo in KEGG ID for MAM20077m

    @Devlin-Moyer
    Devlin-Moyer committed Jan 2, 2024
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  5. fix: formula for MAR20177 (accidentally used the new formula for MAR0… 

    …3800)
    @Devlin-Moyer
    Devlin-Moyer committed Jan 2, 2024
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Commits on Jan 4, 2024

  1. feat-code for getting smiles and inchi of metabolites

    @JHL-452b
    JHL-452b committed Jan 4, 2024
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Commits on Jan 8, 2024

  1. Merge pull request #753 from SysBioChalmers/fix/thiamine_in_oxoacid_d… 

    …ehydrogenase_rxns

Fix inconsistent representation of thiamine and lipoic acid in 2-oxoacid dehydrogenase reactions
    @haowang-bioinfo
    haowang-bioinfo authored Jan 8, 2024
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  2. doc: add removed rxn id to "rxnRetired" column

    @haowang-bioinfo
    haowang-bioinfo committed Jan 8, 2024
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  3. Merge pull request #794 from SysBioChalmers/fix/remove_MAR00965 

    Remove MAR00965 and Fix GPR of MAR00970
    @haowang-bioinfo
    haowang-bioinfo authored Jan 8, 2024
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  4. Merge branch 'develop' into fix/phytanoyl_alpha_ox

    @haowang-bioinfo
    haowang-bioinfo authored Jan 8, 2024
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  5. fix: typos in refences field

    @mihai-sysbio
    mihai-sysbio committed Jan 8, 2024
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  6. chore: merge in latest develop branch

    @Devlin-Moyer
    Devlin-Moyer committed Jan 8, 2024
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Commits on Jan 10, 2024

  1. Merge pull request #731 from JHL-452b/feat_smiles_inchi 

    Feat: added smiles and inchi of metabolites
    @haowang-bioinfo
    haowang-bioinfo authored Jan 10, 2024
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Commits on Jan 11, 2024

  1. Merge pull request #803 from SysBioChalmers/chore/pmid-typos 

    chore: pmid typos
    @mihai-sysbio
    mihai-sysbio authored Jan 11, 2024
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Commits on Jan 28, 2024

  1. fix: renamed MAM02746 metabolites to (3R)-phytanic acid

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  2. fix: brought back previously-deprecated MAM03884 metabolites and rena… 

    …med to (3S)-phytanic acid
    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  3. fix: brought back previously-deprecated MAR00659 and MAR01617

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  4. fix: renamed MAM02747 metabolites to (3R)-phytanoyl-CoA

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  5. fix: replaced MAM02746c with MAM03884c in MAR03388

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  6. fix: made MAR03481 and MAR06779 both ATP-dependent and CoA-hydrolyzing

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  7. fix: replaced MAM02746x with MAM03884x in MAR03389

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  8. fix: renamed MAM00655x to (3R)-2-hydroxyphytanoyl-CoA

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  9. created MAM20083x to represent peroxisomal (2R)-pristanal

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  10. fix: replaced MAM00564x with MAM20083x in MAR03486

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  11. fix: renamed MAM02766 metabolites to (3S)-pristanic acid

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  12. fix: brought back previously-deprecated MAM00077x and MAR03488 and re… 

    …placed MAM00564x with MAM20083x in MAR03488
    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  13. fix: renamed MAM02766 metabolites to (2S)-pristanic acid (wrongly ren… 

    …amed them to (3S)-pristanic acid in earlier commit)
    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  14. fix: replaced MAM02766x with MAM00077x in MAR03493

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  15. feat: created MAM00077c and MAM00077e

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  16. fix: removed deprecated MetaNetX ID from annotations for MAM02766 met… 

    …abolites
    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  17. fix: replace MAM02766c with MAM00077c in MAR03390

    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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  18. feat: created MAR20179 and MAR20180 to represent export and exchange … 

    …of (2R)-pristanic acid
    @Devlin-Moyer
    Devlin-Moyer committed Jan 28, 2024
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Commits on Feb 23, 2024

  1. fix: removed MAR04774, MAR04775, and MAM02955c from YAML file

    @Devlin-Moyer
    Devlin-Moyer committed Feb 23, 2024
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  2. chore: moved row for MAM02955c from model/metabolites.tsv to data/dep… 

    …recatedIdentifiers/deprecatedMetabolties.tsv
    @Devlin-Moyer
    Devlin-Moyer committed Feb 23, 2024
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  3. chore: moved rows for MAR04774 and MAR04775 from model/reactions.tsv … 

    …to data/deprecatedIdentifiers/deprecatedReactions.tsv
    @Devlin-Moyer
    Devlin-Moyer committed Feb 23, 2024
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  4. feat: added references for tagatose metabolism reactions

    @Devlin-Moyer
    Devlin-Moyer committed Feb 23, 2024
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  5. fix: GPRs for mitochondrial 2-enoyl-CoA hydratase reactions

    @Devlin-Moyer
    Devlin-Moyer committed Feb 23, 2024
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Commits on Mar 13, 2024

  1. fix: fill in exchange reaction names

    @edkerk
    edkerk committed Mar 13, 2024
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Commits on Mar 19, 2024

  1. Merge pull request #811 from SysBioChalmers/fix/exchangeRxnNames 

    fix: standardize all names of exchange reactions
    @feiranl
    feiranl authored Mar 19, 2024
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Commits on Apr 4, 2024

  1. fix: undid changes to GPR of MAR03181 that should not have been made

    @Devlin-Moyer
    Devlin-Moyer committed Apr 4, 2024
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Commits on Apr 23, 2024

  1. Merge pull request #574 from SysBioChalmers/feat/AddGeneEssDepMap 

    feat: add gene essentiality check using DepMap
    @feiranl
    feiranl authored Apr 23, 2024
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  2. Merge pull request #792 from SysBioChalmers/fix/phytanoyl_alpha_ox 

    Resolve Duplicate Phytanoyl-CoA Alpha-Oxidation Reactions
    @feiranl
    feiranl authored Apr 23, 2024
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  3. Merge branch 'develop' into fix/dupe_linoleoyl_gamma_linolenoyl_beta_… 

    …ox_paths
    @feiranl
    feiranl authored Apr 23, 2024
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  4. Merge pull request #793 from SysBioChalmers/fix/dupe_linoleoyl_gamma_… 

    …linolenoyl_beta_ox_paths

Merge Duplicate Mitochondrial Linoleic and Gamma-Linolenic Acid Beta-Oxidation Pathways
    @feiranl
    feiranl authored Apr 23, 2024
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  5. fix: changed GPR of MAR03281 to ENSG00000084754 (which I missed earlier)

    @Devlin-Moyer
    Devlin-Moyer committed Apr 23, 2024
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  6. chore: resolve merge conflict with latest develop branch

    @Devlin-Moyer
    Devlin-Moyer committed Apr 23, 2024
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  7. chore: resolve merge conflicts with latest version of develop branch

    @Devlin-Moyer
    Devlin-Moyer committed Apr 23, 2024
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Commits on Apr 24, 2024

  1. Merge pull request #808 from SysBioChalmers/fix/remove_EHHADH_from_mi… 

    …to_gprs

fix: GPRs for mitochondrial 2-enoyl-CoA hydratase reactions
    @feiranl
    feiranl authored Apr 24, 2024
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  2. Merge pull request #807 from SysBioChalmers/fix/tagatose 

    Remove Tagatose-1,6-Bisphosphate
    @feiranl
    feiranl authored Apr 24, 2024
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  3. Merge pull request #805 from SysBioChalmers/fix/phytanic_stereo 

    Fix Stereochemistry of Phytanic Acid Oxidation
    @feiranl
    feiranl authored Apr 24, 2024
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  4. feat: added MAR20181-3 to represent transport functions of SLC25A19

    @Devlin-Moyer
    Devlin-Moyer committed Apr 24, 2024
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  5. fix: removed MAR01788, MAR01789, MAR04205, MAR08745, and MAR08747

    @Devlin-Moyer
    Devlin-Moyer committed Apr 24, 2024
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Commits on Apr 25, 2024

  1. fix: modified unbalance reactions

    @JHL-452b
    JHL-452b committed Apr 25, 2024
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Commits on Apr 26, 2024

  1. Merge pull request #816 from JHL-452b/fix-Correction_of_unbalanced_re… 

    …actions

fix: modified unbalance reactions
    @feiranl
    feiranl authored Apr 26, 2024
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Commits on May 6, 2024

  1. Merge pull request #815 from SysBioChalmers/fix/thiamine_transport 

    Fix Mitochondrial Thiamine Transport Reactions
    @feiranl
    feiranl authored May 6, 2024
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Commits on May 7, 2024

  1. chore: update checkout action from v3 to v4

    @mihai-sysbio
    mihai-sysbio authored May 7, 2024
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  2. Merge pull request #818 from SysBioChalmers/chore/update-actions 

    chore: update actions
    @feiranl
    feiranl authored May 7, 2024
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