remove duplicates

[johan-gson]

Description of the issue:

These reactions are duplicates, they have the same GPR:
MAR04474: {'6-phospho-D-gluconate[c] + NADP+[c] => CO2[c] + NADPH[c] + ribulose-5-phosphate[c]' }
MAR08973: {'3 6-phospho-D-gluconate[c] + 3 NADP+[c] => 3 CO2[c] + 3 NADPH[c] + 3 ribulose-5-phosphate[c]'} (remove this one)

These reactions could be joined into a reversible rxn to avoid loops, they have the same GPRs:
'MAR08482': {'3-oxotetradecanoyl-[ACP][c] + H+[c] + NADPH[c] => HMA[c] + NADP+[c]'}
'MAR02358': {'HMA[c] + NADP+[c] => 3-oxotetradecanoyl-[ACP][c] + H+[c] + NADPH[c]'} moved into #348

I hereby confirm that I have:

• Tested my code on my own computer for running the model
• Done this analysis in the main branch of the repository
• Checked that a similar issue does not exist already

[mihai-sysbio]

NIcely spotted @johan-gson! How did you find these duplicates? Do you think the detection can be scripted?

[johan-gson]

Yeah, I found this doing some script, while working on speeding up tINIT. So, this can be scripted.

[mihai-sysbio]

@johan-gson I hope it's okay that I've edited the issue: the second pair of reactions didn't have the exact same GPRs, so I moved it into #348. This way we can resolve at least the straightforward part of this issue sooner.

[johan-gson]

Very okay, no worries :)

[JonathanRob]

Resolved with #365