fix: model path and allow 2 workflow comments

SysBioChalmers · Oct 19, 2024 · 497bd7b · 497bd7b
1 parent 7f8c8ae
commit 497bd7b
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/.github/workflows/gene-essentiality.yml b/.github/workflows/gene-essentiality.yml
@@ -17,7 +17,7 @@ jobs:
       - name: Run gene essentiality
         id: essentiality
         run: |
-          TEST_RESULTS=$(/usr/local/bin/matlab -nodisplay -nosplash -nodesktop -r "addpath(genpath('.')); ihuman = readYAMLmodel('Human-GEM.yml'); taskStruct = parseTaskList('data/metabolicTasks/metabolicTasks_Essential.txt'); eGenes = estimateEssentialGenes(ihuman, 'Hart2015_RNAseq.txt', taskStruct);output = transpose(evaluateHart2015Essentiality(eGenes)); fid = fopen('data/testResults/gene-essential.csv','w'); fprintf(fid,[repmat('%s,',1,13) '%s\n'],output{:,1}); fprintf(fid,['%s,%d,%d,%d,%d' repmat(',%.4g',1,9) '\n'],output{:,2:end}); fclose(fid); disp(evaluateHart2015Essentiality(eGenes));" | awk 'NR>9 && !/^\.+/')
+          TEST_RESULTS=$(/usr/local/bin/matlab -nodisplay -nosplash -nodesktop -r "addpath(genpath('.')); ihuman = readYAMLmodel('model/Human-GEM.yml'); taskStruct = parseTaskList('data/metabolicTasks/metabolicTasks_Essential.txt'); eGenes = estimateEssentialGenes(ihuman, 'Hart2015_RNAseq.txt', taskStruct);output = transpose(evaluateHart2015Essentiality(eGenes)); fid = fopen('data/testResults/gene-essential.csv','w'); fprintf(fid,[repmat('%s,',1,13) '%s\n'],output{:,1}); fprintf(fid,['%s,%d,%d,%d,%d' repmat(',%.4g',1,9) '\n'],output{:,2:end}); fclose(fid); disp(evaluateHart2015Essentiality(eGenes));" | awk 'NR>9 && !/^\.+/')
           PARSED_RESULTS="${TEST_RESULTS//'%'/'%25'}"
           PARSED_RESULTS="${PARSED_RESULTS//$'\n'/'<br>'}"
           PARSED_RESULTS="${PARSED_RESULTS//$'\r'/'<br>'}"
@@ -42,6 +42,7 @@ jobs:
         uses: NejcZdovc/comment-pr@v2
         with:
           file: "commentGeneEssential.md"
+          identifier: "GITHUB_COMMENT_GENE"
         env:
           GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
           TEST_RESULTS: ${{steps.essentiality.outputs.results}}

diff --git a/.github/workflows/macaw-tests.yml b/.github/workflows/macaw-tests.yml
@@ -52,6 +52,7 @@ jobs:
         uses: NejcZdovc/comment-pr@v2
         with:
           file: "commentMacaw.md"
+          identifier: "GITHUB_COMMENT_MACAW"
         env:
           GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
           TEST_RESULTS: ${{steps.macaw-run.outputs.results}}