fix-GPR curation for PPP, TCA and Pyruvate metabolism #57
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run macaw tests | |
| on: [pull_request] | |
| jobs: | |
| macaw-tests: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Test checkout | |
| run: ls -la && cd code && ls -la | |
| - name: Set up Python 3 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install macaw | |
| run: pip install git+https://github.com/Devlin-Moyer/macaw.git@main numpy==1.26.4 | |
| - name: Run macaw | |
| id: macaw-run | |
| run: | | |
| TEST_RESULTS=$(python code/test/macawTests.py) | |
| echo $TEST_RESULTS | |
| PARSED_RESULTS="${TEST_RESULTS//$'\n'/'<br>'}" | |
| PARSED_RESULTS="${PARSED_RESULTS//$'\r'/'<br>'}" | |
| echo $PARSED_RESULTS | |
| echo "results=$PARSED_RESULTS" >> $GITHUB_OUTPUT | |
| printf "$TEST_RESULTS" > data/testResults/macaw_summary.md | |
| - name: Mention PR# in README.md | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| run: sed -i -e "s/[[:digit:]]\{3,4\}\*\* (MACAW)/$PR_NUMBER\*\* (MACAW)/" data/testResults/README.md | |
| - name: Update local branch before committing changes | |
| env: | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| run: | | |
| git stash | |
| git fetch | |
| git checkout $BRANCH_NAME | |
| if git stash list | grep -q 'stash@{'; then | |
| git stash pop | |
| fi | |
| - name: Auto-commit results | |
| uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_user_name: memote-bot | |
| commit_message: "chore: add macaw test result" | |
| file_pattern: data/testResults/* | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| PR_NUMBER: ${{ github.event.number }} | |
| - name: Post comment | |
| uses: NejcZdovc/comment-pr@v2 | |
| with: | |
| file: "commentMacaw.md" | |
| identifier: "GITHUB_COMMENT_MACAW" | |
| env: | |
| GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} | |
| TEST_RESULTS: ${{steps.macaw-run.outputs.results}} | |
| GH_ACTION_RUN: ${{github.run_id}} | |