fix-GPR curation for Xenobiotics metabolism #55
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| name: Run macaw tests | |
| on: [pull_request] | |
| jobs: | |
| macaw-tests: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Test checkout | |
| run: ls -la && cd code && ls -la | |
| - name: Set up Python 3 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install macaw | |
| run: pip install git+https://github.com/Devlin-Moyer/macaw.git@main numpy==1.26.4 | |
| - name: Run macaw | |
| id: macaw-run | |
| run: | | |
| TEST_RESULTS=$(python code/test/macawTests.py) | |
| echo $TEST_RESULTS | |
| PARSED_RESULTS="${TEST_RESULTS//$'\n'/'<br>'}" | |
| PARSED_RESULTS="${PARSED_RESULTS//$'\r'/'<br>'}" | |
| echo $PARSED_RESULTS | |
| echo "results=$PARSED_RESULTS" >> $GITHUB_OUTPUT | |
| printf "$TEST_RESULTS" > data/testResults/macaw_summary.md | |
| - name: Mention PR# in README.md | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| run: sed -i -e "s/[[:digit:]]\{3,4\}\*\* (MACAW)/$PR_NUMBER\*\* (MACAW)/" data/testResults/README.md | |
| - name: Update local branch before committing changes | |
| env: | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| run: | | |
| git stash | |
| git fetch | |
| git checkout $BRANCH_NAME | |
| if git stash list | grep -q 'stash@{'; then | |
| git stash pop | |
| fi | |
| - name: Auto-commit results | |
| uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_user_name: memote-bot | |
| commit_message: "chore: add macaw test result" | |
| file_pattern: data/testResults/* | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| PR_NUMBER: ${{ github.event.number }} | |
| - name: Post comment | |
| uses: NejcZdovc/comment-pr@v2 | |
| with: | |
| file: "commentMacaw.md" | |
| identifier: "GITHUB_COMMENT_MACAW" | |
| env: | |
| GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} | |
| TEST_RESULTS: ${{steps.macaw-run.outputs.results}} | |
| GH_ACTION_RUN: ${{github.run_id}} | |