fix-GPR_curation_for_Xenobiotics_metabolism #2021
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| name: YAML validation | |
| on: [push] | |
| jobs: | |
| yaml-validation: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/metabolicatlas/memote-docker:0.13 | |
| volumes: | |
| - ${{ github.workspace }}:/project:rw | |
| options: --user root --workdir /project | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: YAML Lint | |
| uses: metabolicatlas/action-yamllint@v3 | |
| with: | |
| ## File(s) or Directory, separate by space if multiple files or folder are specified | |
| file_or_dir: model/ | |
| ## Custom configuration (as YAML source) | |
| config_data: "{extends: default, rules: {line-length: disable}}" | |
| ## Return non-zero exit code on warnings as well as errors | |
| # strict: # optional, default is false | |
| - name: Basic MEMOTE tests | |
| run: python code/test/memoteTest.py | |
| - name: Test import with cobrapy and consistency with annotation files | |
| run: python code/test/sanityCheck.py |