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Remove not used function draw_construct inside Class Renderer in dnaplotlib2.py #11

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Remove not used function draw_construct inside Class Renderer in dnaplotlib2.py #11

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eb74d22
Update dnaplotlib2.py
Omarelsherif010 Nov 7, 2022
6bfb413
delete not used function draw_construct inside Class Renderer in dnap…
Omarelsherif010 Nov 21, 2022
7d066b2
Update __init__.py
Omarelsherif010 Nov 21, 2022
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2 changes: 1 addition & 1 deletion dnaplotlib2/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@
# """
# paraSBOLv
# """
from .parasbolv import *
# from .parasbolv import *
73 changes: 2 additions & 71 deletions dnaplotlib2/dnaplotlib2.py
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Original file line number Diff line number Diff line change
Expand Up @@ -327,7 +327,7 @@ def dfs(self, obj):
if isinstance(self.node, sbol3.Component):

self.visited.add(self.node)

# print(f"node display id ->>> {self.node.display_id}, roles ->> {self.node.roles}, instance of ->> {self.node.instance_of}")
# if object doesn't contain subcomponents features, get its attributes
if self.node.features == []:

Expand Down Expand Up @@ -395,10 +395,7 @@ def bio_render(self, biodesign):
mol_pos = (50,50)
self.biodesign = biodesign

# print(f'biodesign backbones len : {len(self.biodesign.backbones)}')

## draw molecular species
# print(f"self.biodesgin.molecular_species {self.biodesign.molecular_species}")
if len(self.biodesign.molecular_species) != 0:
for mol in self.biodesign.molecular_species:
bound, end_point = self.renderer.draw_glyph(ax, mol['molecular_species_type'], position=mol_pos)
Expand Down Expand Up @@ -426,70 +423,4 @@ def bio_render(self, biodesign):

plt.show()

# def draw_construct(self, biodesign, part_list=[]):
# import parasbolv as psv
# import matplotlib.pyplot as plt

# # Draw construct
# self.biodesign = biodesign
# self.part_list = part_list

# i = 0

# for b in self.biodesign.backbones:

# for part in b:
# self.part_list.append(list(part.values()))

# self.part_dict[i] = self.part_list
# i = i + 1

# # print(self.part_list)
# self.part_list = []
# # print(self.part_list)

# # from collections import namedtuple
# self.interaction_dict = {}
# interaction_list = []
# # interaction = namedtuple('interaction', ['starting_glyph', 'ending_glyph', 'interaction_type', 'interaction_parameters'])

# i = 0

# for interaction in self.biodesign.interaction:
# print('part_dict - > ',self.part_dict)
# print('interaction - >', interaction)


# interaction['start_object'] = list(interaction['start_object'].values())
# interaction['end_object'] = list(interaction['end_object'].values())

# # interaction[]
# interaction_list.append([interaction['start_object'], interaction['end_object'], interaction['interaction_type'],
# {'color': (0.75,0,0)}])
# # interaction_list.append(interaction(part_list[2], part_list[4], 'control', {'color': (0, 0.75, 0),
# # 'direction':'reverse'}))
# self.interaction_dict[i] = interaction_list
# i = i + 1
# interaction_list = []
# print('part_dict - > ',self.part_dict)
# print('interaction_list -> ',interaction_list)
# print('self.interaction_dict - > ', self.interaction_dict)


# # todo- create a loop to draw a list of backbones

# construct = psv.Construct(self.part_dict[0], self.renderer, interaction_list=self.interaction_dict[0])

# fig, ax, baseline_start, baseline_end, bounds = construct.draw()
# ax.plot([baseline_start[0], baseline_end[0]], [baseline_start[1], baseline_end[1]], color=(0,0,0), linewidth=1.5, zorder=0)

# construct2 = psv.Construct(self.part_dict[1], self.renderer, interaction_list=self.interaction_dict[1],
# fig=fig, ax=ax, start_position=(0,60), additional_bounds_list=[bounds])
# construct2.update_bounds()
# fig, ax, baseline_start, baseline_end, bounds = construct2.draw()
# ax.plot([baseline_start[0], baseline_end[0]], [baseline_start[1], baseline_end[1]], color=(0,0,0), linewidth=1.5, zorder=0)

# plt.show()


# # def draw_construct(self, biodesign, part_list):