fixes HTML excaping on news items #2

SwissOpenEM · Sep 9, 2024 · 7af0a1d · 7af0a1d
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diff --git a/_posts/2023-01-16-psi-highlight.md b/_posts/2023-01-16-psi-highlight.md
@@ -7,15 +7,4 @@ categories: media
 
 OpenEM has been featured in a recent article entitled ["Making the most of our
 data"](https://www.psi.ch/en/science/scientific-highlights/making-the-most-of-our-data).
-The article highlights Open Research Data projects at the Paul Scherrer Institute.
-
----
-layout: post
-title: "OpenEM in the media: Making the most of our data"
-date: 2023-01-16 12:00:00 +0100
-categories: media
----
-
-OpenEM has been featured in a recent article entitled ["Making the most of our
-data"](https://www.psi.ch/en/science/scientific-highlights/making-the-most-of-our-data).
-The article highlights Open Research Data projects at the Paul Scherrer Institute.
+The article highlights Open Research Data projects at the Paul Scherrer Institute.
diff --git a/_posts/2023-03-08-empa-job.md b/_posts/2023-03-08-empa-job.md
@@ -13,19 +13,3 @@ EMPA has posted the first job posting for the OpenEM project.
 
 This is the first of six positions which will come available at
 [participating institutions](/members).
-
----
-layout: post
-title: "[Closed] Recruiting a Data Engineer at EMPA!"
-date: 2023-03-08 15:21:40 +0100
-categories: jobs
----
-
-*Update: The EMPA position is no longer accepting applicants. Watch this site for upcoming positions.*
-
-EMPA has posted the first job posting for the OpenEM project.
-
-[Data Engineer](https://apply.refline.ch/673276/1713/pub/3/index.html)
-
-This is the first of six positions which will come available at
-[participating institutions](/members).
diff --git a/_posts/2023-06-15-logo.md b/_posts/2023-06-15-logo.md
@@ -45,53 +45,4 @@ Proceedings MC 2013:
 > K. Kunze, A. Sologubenko, H. Ma, and R. Spolenak. (2013)
 > Orientation contrast imaging and crystallographic orientation mapping using transmission Kikuchi diffraction in the SEM.
 > *Proceedings MC 2013*. Regensburg, August 25 – 30, 2013. Part 1, pages 744-745.
-> DOI: [10.5283/epub.28734](http://doi.org/10.5283/epub.28734)
-
----
-layout: post
-title: "OpenEM logo"
-date: 2023-06-14 15:21:40 +0100
-categories: news
-redirect_from:
-- /logo.html
----
-
-![OpenEM logo](/assets/img/logo-wide-1024x317.png){:.center}
-
-OpenEM has a new logo! This O-shaped ring is a protein structure imaged by Mikhail
-Kudryashev and colleagues at Biozentrum, Universtity of Basel, using cryo-electron
-microscopy.
-
-The bacterium *Vibrio cholerae* uses a syringe-like fiber called the type VI secretion
-system to inject effector molecules into other cells. The outside of this fiber is made
-up of two proteins, VipA and VipB, which form a helical structure with six spiraling
-strands. The logo shows the electron density from a short segment of the sheath.
-
-Data for this image is available from three sources:
-- micrographs from EMPAIR: [EMPIAR-10019](https://www.ebi.ac.uk/empiar/entry/10019)
-- reconstructed 3D electron density from EMDB: [EMD-2699](https://www.ebi.ac.uk/emdb/EMD-2699); and a 
-- molecular model from PDB: [3j9g](https://www.ebi.ac.uk/pdbe/entry/pdb/3j9g)
-The logo was created from this data using [ChimeraX](https://www.cgl.ucsf.edu/chimerax/).
-
-> Mikhail Kudryashev, Ray Yu-Ruei Wang, Maximilian Brackmann, Sebastian Scherer, Timm
-> Maier, David Baker, Frank DiMaio, Henning Stahlberg, Edward H. Egelman, and Marek
-> Basler. (2015)
-> Structure of the Type VI Secretion System Contractile Sheath.
-> *Cell*. 160(5) pp 952-962.
-> Pubmed [25723169](https://europepmc.org/article/MED/25723169)
-> DOI [10.1016/j.cell.2015.01.037](https://doi.org/10.1016/j.cell.2015.01.037)
-
-## Sidebar image
-
-The colorful background used in the sidebar is also an electron micrograph. This
-crystallographic orientation map was produced by Dr. Karsten Kunze and Dr. Alla
-Sologubenko using Transmission Kikuchi Diffraction (TKD). The colors show the
-orientation of each crystal domain in this nanocrystalline Titanium sample (TEM foil).
-For more information see the [ScopeM
-page](https://scopem.ethz.ch/gallery/orientation-map.html) or read more in the
-Proceedings MC 2013:
-
-> K. Kunze, A. Sologubenko, H. Ma, and R. Spolenak. (2013)
-> Orientation contrast imaging and crystallographic orientation mapping using transmission Kikuchi diffraction in the SEM.
-> *Proceedings MC 2013*. Regensburg, August 25 – 30, 2013. Part 1, pages 744-745.
-> DOI: [10.5283/epub.28734](http://doi.org/10.5283/epub.28734)
+> DOI: [10.5283/epub.28734](http://doi.org/10.5283/epub.28734)
diff --git a/_posts/2023-07-17-unige-dci-jobs.md b/_posts/2023-07-17-unige-dci-jobs.md
@@ -9,10 +9,8 @@ Two new positions are now seeking applicants for the OpenEM project!
 The Dubochet Center for Imaging in Geneva (University of Geneva) has an opening for a developer position.
 Additionally, DCI-Lausanne (UNIL/EPFL) is looking for a software engineer.
 
-<div class="center">
 [Apply for the DCI-Geneva position](https://jobs.unige.ch/www/wd_portal.show_job?p_web_site_id=1&p_web_page_id=61431)
 
 [Apply for the DCI-Lausanne position](https://recruiting.epfl.ch/Vacancies/2973/Description/2)
-</div>
 
 Additional jobs may be posted soon at other [participating institutions](/members).
diff --git a/_posts/2024-02-23-oscem.md b/_posts/2024-02-23-oscem.md
@@ -31,39 +31,4 @@ publishing in public repositories.
 If you are interested in joining the community, please contact [Jose Maria
 Carazo](http://i2pc.es/carazo/) or [Spencer
 Bliven](https://www.psi.ch/en/lsm/people/spencer-edward-bliven), or see the [workshop
-event page](https://indico.psi.ch/e/em-standards-2024).
-
----
-layout: post
-title: "Announcing the Open Science Community for EM (OSCEM)"
-date: 2024-02-23 12:21:40 +0100
-categories: news
----
-
-OpenEM strives to follow [FAIR](https://force11.org/info/the-fair-data-principles//)
-principles for all of our data: **F**indable, **A**ccessible, **I**nteroperable, and
-**R**eusable. A major part of interoperability between services is describing datasets
-using a standardized vocabulary shared between the larger electron microscopy community.
-This means representing data with a well-defined *schema* or data model, as well as
-agreeing on an *ontology* defining the meaning of each piece of metadata.
-
-While some standards are available for electron microscopy data, no single standard
-covers the full data lifecycle from data collection through publication. As such, a
-workshop was held at [Paul Scherrer Institute](https://www.psi.ch/en) on the 22-23
-February, 2024, with participants from across the EM community. It included
-representatives of EM facilities, developers of tools for processing EM data, and
-members of the large EM data repositories such as [EMDB](https://www.ebi.ac.uk/emdb/).
-
-As a result of this workshop, the **Open Science Community for Electron Microscopy
-(OSCEM)** will draft a standard for representing EM metadata. The standard will include
-all metadata required for processing an electron microscopy dataset, with additional
-fields to support important use cases such as depositing data in the [Electron
-Microscopy Public Image Archive](https://www.ebi.ac.uk/empiar/#), EMDB, and
-[PDB](https://www.wwpdb.org/). The standard links existing ontologies where possible,
-but extends these to include the full data lifecycle from data collection through
-publishing in public repositories.
-
-If you are interested in joining the community, please contact [Jose Maria
-Carazo](http://i2pc.es/carazo/) or [Spencer
-Bliven](https://www.psi.ch/en/lsm/people/spencer-edward-bliven), or see the [workshop
-event page](https://indico.psi.ch/e/em-standards-2024).
+event page](https://indico.psi.ch/e/em-standards-2024).
diff --git a/_posts/2024-06-10-establish-updates.md b/_posts/2024-06-10-establish-updates.md
@@ -20,28 +20,4 @@ Anyone is welcome to attend this event online. You can register for free [here](
 
 Slides from the presentation are available from [zenodo](https://zenodo.org/doi/10.5281/zenodo.11632469).
 
-*Edit*: A recording of the presentations can be viewed [here](https://epfl.zoom.us/rec/play/rWpJ4kYbs9Y5tCWx7HSKAjtJ88DpSprhpgrChGQ6MXSq4awDtVU7csV6MUYrfnCSiVuIdQfVoBRel01O.Ck4LyAPReXgo7fm4?canPlayFromShare=true&from=my_recording&continueMode=true&componentName=rec-play&originRequestUrl=https%3A%2F%2Fepfl.zoom.us%2Frec%2Fshare%2FxzKmvOza1unpe_fI7fycddZwltVoXbDDB4sZAITIM76xYg5wx1caRPxedjOKhi3P.jzbj-h0fjspgWxrE). The OpenEM portion starts at 41:03 in the recording.
-
----
-layout: post
-title: "Public presentation on OpenEM June 13"
-date: 2024-06-10 12:00:00 +0100
-categories: media
----
-
-Join us for updates on OpenEM and our sister project, PREMISE! This follows the submission of the project's intermediate report to the ETH-ORD committee. More information:
-
----
-
-On 13 June 2024, the two establish projects financed by the ETH Domain ORD programme will be presented: 
-- 9.00-9.30: Open and Reproducible Materials Science Research led by Giovanni Pizzi
-- 9.30-10.00: Open EM Data Network led by Henning Stahlberg
-- 10.00-10.30: Discussion – “open science in these two projects”, best practices, exchanges, etc. 
-
-The establish projects aim at establishing ORD practices that are already existing, with a research agenda and a common understanding about ORD practices. The goal is that they become the de facto standards in a community and raise the quality level. 
-
-Anyone is welcome to attend this event online. You can register for free [here](https://lnkd.in/gAQSeQgd).
-
-Slides from the presentation are available from [zenodo](https://zenodo.org/doi/10.5281/zenodo.11632469).
-
-*Edit*: A recording of the presentations can be viewed [here](https://epfl.zoom.us/rec/play/rWpJ4kYbs9Y5tCWx7HSKAjtJ88DpSprhpgrChGQ6MXSq4awDtVU7csV6MUYrfnCSiVuIdQfVoBRel01O.Ck4LyAPReXgo7fm4?canPlayFromShare=true&from=my_recording&continueMode=true&componentName=rec-play&originRequestUrl=https%3A%2F%2Fepfl.zoom.us%2Frec%2Fshare%2FxzKmvOza1unpe_fI7fycddZwltVoXbDDB4sZAITIM76xYg5wx1caRPxedjOKhi3P.jzbj-h0fjspgWxrE). The OpenEM portion starts at 41:03 in the recording.
+*Edit*: A recording of the presentations can be viewed [here](https://epfl.zoom.us/rec/play/rWpJ4kYbs9Y5tCWx7HSKAjtJ88DpSprhpgrChGQ6MXSq4awDtVU7csV6MUYrfnCSiVuIdQfVoBRel01O.Ck4LyAPReXgo7fm4?canPlayFromShare=true&from=my_recording&continueMode=true&componentName=rec-play&originRequestUrl=https%3A%2F%2Fepfl.zoom.us%2Frec%2Fshare%2FxzKmvOza1unpe_fI7fycddZwltVoXbDDB4sZAITIM76xYg5wx1caRPxedjOKhi3P.jzbj-h0fjspgWxrE). The OpenEM portion starts at 41:03 in the recording.
diff --git a/news.markdown b/news.markdown
@@ -12,17 +12,18 @@ tags:
 
 {% assign posts = site.posts | sort: "date" | reverse %}
 
-<ul class="timeline">
- {% for post in posts %}
-  <li class="timeline-item right">
-  <div class="timeline-content">
-  <strong class="post-date">{{ post.date | date: "%B %d, %Y" }}</strong>
-  <h3><a href="{{ post.url | relative_url }}">{{ post.title }}</a></h3>
-  <div class="post-excerpt">
-  {{ post.excerpt | truncate: 200 }}
-  </div>
-  </div>
-  </li>
- {% endfor %}
+<html>
+ <ul class="timeline">
+  {% for post in posts %}
+  <li class="timeline-item right">
+  <div class="timeline-content">
+  <strong class="post-date">{{ post.date | date: "%B %d, %Y" }}</strong>
+  <h3><a href="{{ post.url | relative_url }}">{{ post.title }}</a></h3>
+  <div class="post-excerpt">
+  {{ post.excerpt | markdownify }} <!-- Ändere die Anzahl der Wörter nach Bedarf -->
+  </div>
+  </div>
+  </li>
+  {% endfor %}
  </ul>
- 
+</html>