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MechRepoNet

This repository contains the scripts and files required to build the MechRepoNet Network as well as build the associated Repositioning Model and perform analysis.

MechRepoNet is fully described in this preproof publication.

Organization

This repository is organized as follows.

/0_data           # Contains data needed to for use within scripts
    manual        # Data built manually. Most will be included, unless built from proprietary source
    external      # Data acquired from external sources. Not included, but scripts will provide most
/1_code           # Contains all code for running the pipeline. Scripts and notebooks are numbered in order they should be run.
    tools         # contains tools for building
/2_pipeline       # Output folder for pipeline. Not included with repo
/3_figures        # Figure outputs for select figures
/tools            # simlik to /1_code/tools for compatibility with legacy code

Setting up the environment

A requirements.txt file is provided for running this code. To set up the environment run

$ pip install -r requirements.txt