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Stuartlab-UCSC

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  1. hexmap-view hexmap-view Public

    JavaScript 3 3

  2. clustermethods clustermethods Public

    Code to run different clustering methods on a dataset and compare the results.

    Python 2 1

  3. stuartlab-scripts stuartlab-scripts Public

    Forked from decarlin/stuartlab-scripts

    Repository for Josh Stuart's UCSC lab

    Python 1

  4. deep_essentiality deep_essentiality Public

    deep learning for predicting gene essentiality

    Jupyter Notebook 1

  5. leesl leesl Public

    Forked from mrJeppard/leesl

    Simple implementation of Lee's bivariate spatial association metric.

    Python 1

  6. traj-formats traj-formats Public

    Format specifications for communicating trajectory information.

    1 2

Repositories

Showing 10 of 36 repositories
  • hexmap-data Public

    compute server for hexmap

    Stuartlab-UCSC/hexmap-data’s past year of commit activity
    Python 0 1 2 3 Updated Jul 6, 2023
  • hexmap-view Public
    Stuartlab-UCSC/hexmap-view’s past year of commit activity
    JavaScript 3 MIT 3 48 5 Updated Apr 16, 2023
  • cell-atlas Public
    Stuartlab-UCSC/cell-atlas’s past year of commit activity
    JavaScript 1 MIT 0 0 25 Updated Jan 4, 2023
  • cytracepy-eval Public

    Scripts that were used to investigate the behaviour of the cytracepy distance function

    Stuartlab-UCSC/cytracepy-eval’s past year of commit activity
    Shell 0 MIT 0 0 7 Updated Dec 8, 2022
  • cytracepy Public

    Python package that provides a flexible distance measure for outputs of trajectory inference algorithms.

    Stuartlab-UCSC/cytracepy’s past year of commit activity
    Python 0 MIT 1 0 7 Updated Dec 8, 2022
  • cell-atlas-env Public

    UCSC Cell Atlas

    Stuartlab-UCSC/cell-atlas-env’s past year of commit activity
    Python 0 MIT 0 0 10 Updated Sep 30, 2022
  • cluster-db Public

    Single cell clustering database

    Stuartlab-UCSC/cluster-db’s past year of commit activity
    Python 0 MIT 1 1 7 Updated Jun 21, 2022
  • ctwingest Public

    A dependency of Stuartlab-UCSC/ctwpy and Stuartlab-UCSC/ctwseruat

    Stuartlab-UCSC/ctwingest’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Jun 2, 2021
  • ctwpy Public

    Generate and Upload Cell Type Worksheets to the UCSC Cell Atlas.

    Stuartlab-UCSC/ctwpy’s past year of commit activity
    Python 0 MIT 1 0 0 Updated May 6, 2020
  • ctwseurat Public
    Stuartlab-UCSC/ctwseurat’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 16, 2020
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