Release1.4 #352
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| - testing | |
| pull_request: | |
| branches: | |
| - master | |
| - develop | |
| - testing | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| # We include 'next' in order to always test the latest patched release, but mac and Windows binaries are not deployed to the drat repo: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # for windows and mac all builds are pushed to drat repo on merge to master (except pre-release builds), except 'next' | |
| - {os: macOS-latest, r: 'next', pkgext: '.tgz'} # will be tested without suggests | |
| - {os: macOS-latest, r: '4.3', pkgext: '.tgz'} # will be tested without suggests | |
| - {os: windows-latest, r: 'next', pkgext: '.zip'} | |
| - {os: windows-latest, r: '4.3', pkgext: '.zip'} | |
| - {os: ubuntu-latest, r: 'next', pkgext: '.tar.gz', rspm: "https://cloud.r-project.org"} | |
| - {os: ubuntu-22.04, r: '4.3', pkgext: '.tar.gz', rspm: "https://cloud.r-project.org"} | |
| # 4.2 is pushed to drat repo on merge to master for ubunutu (except pre-release builds), update script if 4.2 is taken out | |
| - {os: ubuntu-22.04, r: '4.2', pkgext: '.tar.gz', rspm: "https://cloud.r-project.org"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Do autorelease increment, tagging, and environment setup | |
| if: github.event_name == 'push' | |
| run: | | |
| curl "https://raw.githubusercontent.com/StoXProject/unstableRepo/main/scripts/checktag-actions.sh" --output unstableRepo_checktag.sh | |
| curl "https://raw.githubusercontent.com/StoXProject/unstableRepo/main/scripts/deploy-actions.sh" --output unstableRepo_deploy.sh | |
| chmod +x ./unstableRepo_checktag.sh ./unstableRepo_deploy.sh | |
| . unstableRepo_checktag.sh | |
| curl "https://raw.githubusercontent.com/StoXProject/testingRepo/main/scripts/checktag-actions.sh" --output testingRepo_checktag.sh | |
| curl "https://raw.githubusercontent.com/StoXProject/testingRepo/main/scripts/deploy-actions.sh" --output testingRepo_deploy.sh | |
| chmod +x ./testingRepo_checktag.sh ./testingRepo_deploy.sh | |
| . testingRepo_checktag.sh | |
| curl "https://raw.githubusercontent.com/StoXProject/repo/master/scripts/checktag-actions.sh" --output repo_checktag.sh | |
| curl "https://raw.githubusercontent.com/StoXProject/repo/master/scripts/deploy-actions.sh" --output repo_deploy.sh | |
| chmod +x ./repo_checktag.sh ./repo_deploy.sh | |
| . repo_checktag.sh | |
| echo "PRERELEASE=${PRERELEASE}" >> $GITHUB_ENV | |
| echo "FINAL_TAG=${FINAL_TAG}" >> $GITHUB_ENV | |
| echo "PKG_FILE_PREFIX=${PKG_FILE_PREFIX}" >> $GITHUB_ENV | |
| echo "PKG_FILE=${PKG_FILE_PREFIX}${{ matrix.config.pkgext }}" >> $GITHUB_ENV | |
| echo "PKG_FREL=${PKG_FILE_PREFIX}-R.${{ matrix.config.r }}-${{ runner.os }}${{ matrix.config.pkgext }}" >> $GITHUB_ENV | |
| echo "PKG_REPO=${GITHUB_WORKSPACE}" >> $GITHUB_ENV | |
| shell: bash | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install MacOS system dependencies | |
| if: runner.os == 'macOS' | |
| run: | | |
| rm -f '/usr/local/bin/gfortran' | |
| rm -f '/usr/local/bin/2to3' | |
| rm -f '/usr/local/bin/2to3-3.11' | |
| rm -f '/usr/local/bin/idle3' | |
| rm -f '/usr/local/bin/idle3.11' | |
| rm -f '/usr/local/bin/pydoc3' | |
| rm -f '/usr/local/bin/pydoc3.11' | |
| rm -f '/usr/local/bin/python3' | |
| rm -f '/usr/local/bin/python3.11' | |
| rm -f '/usr/local/bin/python3-config' | |
| rm -f '/usr/local/bin/python3.11-config' | |
| export HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK=false # This prevents Homebrew from re-installing R, which will lead to .Platform$pkgType = "source". | |
| brew install gdal | |
| shell: bash | |
| - name: Prepare for dependencies on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get install libgdal-dev libproj-dev libgeos-dev libudunits2-dev | |
| shell: bash | |
| - name: Install dependencies on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Install dependencies on Windows and macOS | |
| if: runner.os != 'Linux' | |
| run: | | |
| # First try binary and then possibly source: | |
| options(install.packages.check.source = "no") | |
| remotes::install_deps(dependencies = TRUE, type = "binary") | |
| installed <- utils::installed.packages()[, "Package"] | |
| needed <- remotes::dev_package_deps() | |
| missing <- setdiff(needed$package, installed) | |
| if(length(missing)) { | |
| message("Installing the following packages using default type:\n", paste0(missing, collapse = ", ")) | |
| utils::install.packages(missing, dependencies = TRUE) | |
| } | |
| shell: Rscript {0} | |
| # | |
| # Install Reca (awlays from prod repo) | |
| # | |
| - name: Install Reca | |
| run: | | |
| remotes::install_cran("Reca", repos = c("https://stoxproject.github.io/repo/", "https://cloud.r-project.org/")) | |
| shell: Rscript {0} | |
| - name: Install CRANdependencies | |
| run: | | |
| install.packages(c("rcmdcheck", "git2r", "sessioninfo", "knitr", "remotes")) | |
| # Using the latest drat that supports big sur (after inputs from us). | |
| # When the next drat appears on CRAN this can be changed to install from CRAN: | |
| remotes::install_github(repo = 'eddelbuettel/drat', dependencies = FALSE) | |
| shell: Rscript {0} | |
| # | |
| # Install StoX dependencies, corresponding to release status (unstable, pre-release or release) | |
| # | |
| - name: Install R package dependencies from the unstableRepo | |
| if: (github.event_name == 'push' && github.ref_name == 'develop') || (github.event_name == 'pull_request' && github.base_ref == 'develop') | |
| run: | | |
| remotes::install_deps(dependencies = TRUE, repos = c("https://stoxproject.github.io/unstableRepo/", "https://cloud.r-project.org/")) | |
| shell: Rscript {0} | |
| - name: Install R package dependencies from the testingRepo | |
| if: (github.event_name == 'push' && github.ref_name == 'testing') || (github.event_name == 'pull_request' && github.base_ref == 'testing') | |
| run: | | |
| remotes::install_deps(dependencies = TRUE, repos = c("https://stoxproject.github.io/testingRepo/", "https://cloud.r-project.org/")) | |
| shell: Rscript {0} | |
| - name: Install R package dependencies from the official repo | |
| if: (github.event_name == 'push' && github.ref_name == 'master') || (github.event_name == 'pull_request' && github.base_ref == 'master') | |
| run: | | |
| remotes::install_deps(dependencies = TRUE, repos = c("https://stoxproject.github.io/repo/", "https://cloud.r-project.org/")) | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| # turn off testing of suggestions for configurations where Reca is not provided in StoX package repositories | |
| - name: Check without suggest-dependencies | |
| if: runner.os == 'macOS' | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| _R_CHECK_FORCE_SUGGESTS_ : false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "error", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Check with suggest-dependencies | |
| if: runner.os != 'macOS' | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| _R_CHECK_FORCE_SUGGESTS_ : true | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "error", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show test output | |
| if: always() | |
| run: find check -name 'tinytest.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Build package source archive from branches develop, testing and master | |
| if: runner.os == 'Linux' && matrix.config.r == '4.2' && github.event_name == 'push' && (github.ref_name == 'master' || github.ref_name == 'testing' || github.ref_name == 'develop') | |
| run: | | |
| pkgbuild::build(".", dest_path = ".", binary = FALSE) | |
| system(paste0("PKG_FREL=", Sys.getenv("PKG_FILE"), " >> ", Sys.getenv("GITHUB_ENV"))) | |
| shell: Rscript {0} | |
| - name: Build package binary archive from branches develop, testing and master for Windows and macOS (this builds also on matrix.config.r = release, which can or can not be a duplicate) | |
| if: (runner.os == 'Windows' || runner.os == 'macOS') && github.event_name == 'push' && (github.ref_name == 'master' || github.ref_name == 'testing' || github.ref_name == 'develop') | |
| run: | | |
| pkgbuild::build(".", dest_path = ".", binary = TRUE) | |
| print("PKG_FILE") | |
| print(Sys.getenv("PKG_FILE")) | |
| print("PKG_FREL") | |
| print(Sys.getenv("PKG_FREL")) | |
| file.copy(Sys.getenv("PKG_FILE"), Sys.getenv("PKG_FREL")) | |
| shell: Rscript {0} | |
| ## 5a. Upload to the official (DRAT) repo, but only from the master branch. Here we skip the matrix.config.r = release, as a new StoX release should be ready shortly after each R minor release and listed specifically in the matrix.config: | |
| - name: Upload to the official (DRAT) repo | |
| if: ( (runner.os == 'Windows' && matrix.config.r != 'next') || (runner.os == 'macOS' && matrix.config.r != 'next') || (runner.os == 'Linux' && matrix.config.r == '4.2') ) && github.event_name == 'push' && github.ref_name == 'master' | |
| env: | |
| BUILD_NUMBER: ${{ github.sha }} | |
| DRAT_DEPLOY_TOKEN: ${{ secrets.DRAT_DEPLOY_TOKEN }} | |
| run: . repo_deploy.sh | |
| shell: bash | |
| ## 5b. Upload to the (DRAT) testingRepo, but only from the testing branch. Here we skip the matrix.config.r = release, as a new StoX release should be ready shortly after each R minor release and listed specifically in the matrix.config: | |
| - name: Upload to the testing (DRAT) repo | |
| if: ( (runner.os == 'Windows' && matrix.config.r != 'next') || (runner.os == 'macOS' && matrix.config.r != 'next') || (runner.os == 'Linux' && matrix.config.r == '4.2') ) && github.event_name == 'push' && github.ref_name == 'testing' | |
| env: | |
| BUILD_NUMBER: ${{ github.sha }} | |
| DRAT_DEPLOY_TOKEN: ${{ secrets.DRAT_DEPLOY_TOKEN }} | |
| run: . testingRepo_deploy.sh | |
| shell: bash | |
| ## 5c. Upload to the (DRAT) unstableRepo, but only from the develop branch. Here we skip the matrix.config.r = release, as a new StoX release should be ready shortly after each R minor release and listed specifically in the matrix.config: | |
| - name: Upload to the unstable (DRAT) repo | |
| if: ( (runner.os == 'Windows' && matrix.config.r != 'next') || (runner.os == 'macOS' && matrix.config.r != 'next') || (runner.os == 'Linux' && matrix.config.r == '4.2') ) && github.event_name == 'push' && github.ref_name == 'develop' | |
| env: | |
| BUILD_NUMBER: ${{ github.sha }} | |
| DRAT_DEPLOY_TOKEN: ${{ secrets.DRAT_DEPLOY_TOKEN }} | |
| run: . unstableRepo_deploy.sh | |
| shell: bash | |
| ############################### | |
| #### 6. Release on GitHub: #### | |
| ############################### | |
| - name: Create release on GitHub and upload files for testing branch | |
| if: ( (runner.os == 'Windows' && matrix.config.r != 'next') || (runner.os == 'macOS' && matrix.config.r != 'next') || (runner.os == 'Linux' && matrix.config.r == '4.2') ) && github.event_name == 'push' && github.ref_name == 'testing' | |
| uses: ncipollo/release-action@v1 | |
| with: | |
| allowUpdates: true | |
| commit: testing | |
| tag: ${{ env.FINAL_TAG }} | |
| name: ${{ env.FINAL_TAG }} | |
| artifacts: ${{ env.PKG_REPO }}/${{ env.PKG_FREL }} | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Create release on GitHub and upload files for master branch | |
| if: ( (runner.os == 'Windows' && matrix.config.r != 'next') || (runner.os == 'macOS' && matrix.config.r != 'next') || (runner.os == 'Linux' && matrix.config.r == '4.2') ) && github.event_name == 'push' && github.ref_name == 'master' | |
| uses: ncipollo/release-action@v1 | |
| with: | |
| allowUpdates: true | |
| commit: master | |
| tag: ${{ env.FINAL_TAG }} | |
| name: ${{ env.FINAL_TAG }} | |
| artifacts: ${{ env.PKG_REPO }}/${{ env.PKG_FREL }} | |
| token: ${{ secrets.GITHUB_TOKEN }} |