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1. 3DChromatin_ReplicateQC 3DChromatin_ReplicateQC Public

   Forked from kundajelab/3DChromatin_ReplicateQC

   Software to compute reproducibility and quality scores for Hi-C data

   Python

2. hicrep hicrep Public

   Forked from TaoYang-dev/hicrep

   R package to evaluate the reproducibility of Hi-C data

   R

3. HiC-spector HiC-spector Public

   Forked from gersteinlab/HiC-spector

   Spectral and reproducibility analysis of Hi-C contact maps

   Julia

4. genomedisco genomedisco Public

   Forked from kundajelab/genomedisco

   Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

   Jupyter Notebook

5. hifive hifive Public

   Forked from bxlab/hifive

   Tools for handling HiC and 5C data

   Python

6. HiC_tools HiC_tools Public

   Forked from mdozmorov/HiC_tools

   A collection of tools for Hi-C data analysis