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Remove cache folder#2927

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alejoe91 merged 83 commits intoSpikeInterface:mainSpikeInterface/spikeinterface:mainfrom paulrignanese:remove_cache_folderpaulrignanese/spikeinterface:remove_cache_folderCopy head branch name to clipboardJun 6, 2024

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Commits on May 29, 2024

• remove the setting of cache folder as global test_core_tools in core/test folder

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• remove the setting of cache folder as global common_benchmark_testing in sortingcomponents/benchmark/tests folder

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• remove the setting of global cache folder as global test_average_across_direction in preprocessing/tests folder

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• replace cache_folder creation and global setting with pytest fixtures tmp_path for test_filter_gaussian in preprocessing/tests folder

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• in progress

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Commits on May 30, 2024

• replace cache folder with pytest fixture for test_motion_extimation in sortingcomponents/test/ folder

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• remove of useless cache folder for test_motion_interpolation in sortingcomponents/tests

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• rename test_NumpyRecording by setup_NumpyRecording as no tests were done, replace cache_folder with pytest fixture for test_numpy_extractors in core/tests

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• remove useless setting of cache_folder as global variable

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• replace cache_folder (study_folder) with pytext fixture for test_groundtruthstudy in comparison/tests/ folder

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• replace cache_folder with pytext fixture in new cache_folder_creation function for test_node_pipeline.py in core/tests/ folder

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• replace cache_folder with pytext fixture and add new cache_folder_creation function for test_npyfoldersnippets.py in core/tests/ folder

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• replace cache_folder with pytext fixture and add new cache_folder_creation function for test_motion.py in preprocessing/tests/ folder

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• remove useless setting of cache folder as global variable

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• remove useless cache folder creation (was commented)

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• remove useless cache folder creation (was commented)

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• replace setting of global cache folder by pytest fixture with new create_cache_folder function for test_silence.py in preprocessing/tests/

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• replace setting of cache folder by pytest fixture with new create_cache_folder function for test_binaryrecordingextractor.py in core/tests/

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• replace setting of global cache_folder by pytest fixture with new create_cache_folder function for test_whiten.py in preprocessing/tests/

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• replace setting of cache_folder by pytest fixture with new create_cache_folder function for test_unitsaggregationsorting.py in core/tests/

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• Merge remote-tracking branch 'origin/main'

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• replace setting of cache_folder by pytest fixture with new create_cache_folder function for test_time_handling.py in core/tests/

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• replace setting of cache_folder by pytest fixture with new create_cache_folder function for test_time_handling.py in core/tests/

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• replace setting of cache_folder by pytest fixture with new create_cache_folder function for test_basesorting.py in core/tests/

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• remove useless setting of cache_folder as global variable for test_clip.py in preprocessing/tests/

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• replace cache folder import by pytest fixture with new cache_folder_creation for test_benchmark_peak_localization.py in sortingcomponents/benchmark/tests/ folder, even if here the tests are skipped

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• replace cache_folder creation by pytest fixture with new cache_folder_creation for test_sorting_folder.py in core/tests/ folder

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• replace cache_folder by pytest fixture with new cache_folder_creation for test_globals.py in core/tests/ folder

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• replace cache_folder by pytest fixture with new cache_folder_creation for test_benchmark_motion_interpolation.py in sortingcomponents/benchmark/tests/ folder (even thought it is skipped)

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• remove useless cache_folder for test_widgets.py in widgets/tests/ folder

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• replace cache folder with pytest fixture by new create_cache_folder in test_baserecodring.py in core/tests/ folder

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• replace cache folder with pytest fixture by new create_cache_folder in test_npysnippetextractor.py in core/tests/ folder

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• replace useless cache_folder in test_align_snippets.py in preprocessing/tests/ folder

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• replace cache_folder with pytest fixture by new create_cache_folder for test_benchmark_peak_detection.py in sortingcomponents/benchmark/tests/ folder (even thgough it is skipped)

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• replace cache_folder with pytest fixture by new create_cache_folder for test_binaryfolder.py in core/tests/ folder

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• replace cache_folder with pytest fixture by new create_cache_folder for test_deepinterpolation.py in preprocessing/deepinterpolation/tests/ folder

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• replace cache_folder with pytest fixture by new create_cache_folder for test_analyzer_extension_core.py in core/tests/ folder

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• replace cache_folder with pytest fixture by new create_cache_folder for test_channelslicerecording.py in core/tests/ folder

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• remove useless cache_folder with pytest fixture for test_quality_metric_calculator.py in qualitymetrics/tests/ folder

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• replace cache_folder by pytest fixture with new create_cache_folder for test_basesnippets.py in core/tests folder

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• replace cache_folder by pytest fixture in setup_module for test_container_tools.py in sorters/tests folder

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• replace cache_folder by pytest fixture in setup_module for test_hybrid.py in comparison/tests folder

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• replace cache_folder import from common.py by pytest fixture with new create_cache_folder for test_report.py in exporters/tests folder

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• replace cache_folder import from common.py by pytest fixture with new create_cache_folder for test_export_to_phy.py in exporters/tests folder

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• replace cache_folder import from common_benchmark_testing.py by pytest fixture with new create_cache_folder for test_benchmark_clustering.py in sortingcomponents/benchmark/tests folder

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• replace cache_folder import from common_benchmark_testing.py by pytest fixture with new create_cache_folder for test_benchmark_peak_selection.py and test_benchmark_matching.py sortingcomponents/ben…

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• remove useless cache_folder for test_align_sorting.py in postprocessing/tests/ folder

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• replace cache_folder by pytest fixture with new create_cache_folder for test_drift_tools.py in generation/tests/ folder

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• replace cache_folder by pytest fixture with new create_cache_folder for test_mdaextractors.py in extractors/tests/ folder

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• replace cache_folder by pytest fixture with new create_cache_folder for test_shybridextractors.py in extractors/tests/ folder (event hought it is skipped)

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• removed useless cache_folder_creation and global setting for common.py, test_auto_merge.py and test_sortingview_curation.py in curation/tests/ folder

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• removed useless cache_folder_creation setting for common.py, test_noise_levels_propagation.py in core/tests/ folder

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• replaced cache_folder by pytest fixture with new create_cache_folder for test_NpzSortingExtractor.py in core/tests/ folder

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• replaced cache_folder by pytest fixture with new create_cache_folder for test_waveform_tools.py in core/tests/ folder

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• replaced cache_folder by pytest fixture with new create_cache_folder for test_waveforms_extractor_backwards_compatibility.py in core/tests/ folder

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• remove useless import (copypaste mistake)

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• Revert "replace cache_folder with pytest fixture by new create_cache_folder for test_deepinterpolation.py in preprocessing/deepinterpolation/tests/ folder"

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Commits on May 31, 2024

• replace cache_folder by pytest fixture in common_extension_tests.py with new create_cache_folder method, and modify test_template_similarity.py to have the test function as method of the class whic…

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• removal of a decorator use in debugging that I forgot about

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• replace cache_folder by pytest fixture with new create_cache_folder method for SorterCommonTestSuite and SnippetsSorterCommonTestSuite in common_tests.py

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• replace cache_folder by pytest fixture with new create_cache_folder for test_multisortingcomparison.py in comparison/test folder

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• remove commented cache_folder for test_templatecomparison.py in comarison/tests folder

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• remove import of cache_folder from common_extension_tests, as it is inherited from AnalyzerExtensionCommonTestSuite now, for test_principal_component.py in postprocessing/tests/ folder

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• remove useless global setting of cache_folder for test_de

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• remove useless global setting of cache_folder for test_filter.py in preprocessing/tests/ folder

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• remove useless global setting of cache_folder for test_normalize_scale.py in preprocessing/tests/ folder

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• remove useless global setting of cache_folder for test_rectify.py in preprocessing/tests/ folder

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• remove commented global setting of cache_folder for test_remove_artifacts.py in preprocessing/tests/ folder

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• remove useless cache_folder for test_resample.py in preprocessing/tests/ folder

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• replace depreciated output_folder by folder in runsorter, and replace cache_folder by pytest fixture for test_docker_containers.py in sorters/external/tests (fails possibly because of docker not wo…

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• replace import of cache_folder from SorterCommonTestSuite as it is now inherited as self.cache_folder in Kilosort4SorterCommonTestSuite for test_kilosort4.py in sorters/external/tests folder

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• replace depreciated output_folder by folder in runsorter calls, and replace cache_folder by pytest fixture for test_singularity_containers.py in sorters/external/tests

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• replace depreciated output_folder by folder in runsorter calls for test_singularity_containers_gpu.py in sorters/external/tests

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• TO DO those three files are the only cache_folder remaining in tests, need to be replaced by pytest fixtures however there are not trivial

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Commits on Jun 3, 2024

• replace cache_folder by pytest fuxture with new create_cachce_folder for test_deepinterpolation.py in deepinterpolation/tests folder (I reverted those changes because we thought that it was produci…

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Commits on Jun 5, 2024

• Fix import conflicts

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• Fix deepeinteprolation tests

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• Fix remaining TODOs

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Commits on Jun 6, 2024

• Move create_cache_folder to conftest.py and cleanup pytest session start/cleanup

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• Fix scope for test_launcher

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• Fix deepinterpolation fixtures

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• Make create_cache_folder module scoped and fix exporters

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