Update KS4 parameters #2810
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Update KS4 parameters #2810
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zm711
reviewed
May 6, 2024
| @@ -81,6 +84,7 @@ class Kilosort4Sorter(BaseSorter): | |||
| "ccg_threshold": "Fraction of refractory period violations that are allowed in the CCG compared to baseline; used to perform splits and merges. Default value: 0.25.", | |||
| "cluster_downsampling": "Inverse fraction of nodes used as landmarks during clustering (can be 1, but that slows down the optimization). Default value: 20.", | |||
| "cluster_pcs": "Maximum number of spatiotemporal PC features used for clustering. Default value: 64.", | |||
| "x_centers": "Number of x-positions to use when determining center points for template groupings. If None, this will be determined automatically by finding peaks in channel density. For 2D array type probes, we recommend specifying this so that centers are placed every few hundred microns.", | |||
| "duplicate_spike_bins": "Number of bins for which subsequent spikes from the same cluster are assumed to be artifacts. A value of 0 disables this step. Default value: 15.", | |||
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The duplicate_spike_bins default needs to be switched to 7 as well :)
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Zach you must have at least 3 pairs of eyes!!! Fixed
zm711
approved these changes
May 9, 2024
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Fixes #2806
max_channel_distanceandx_centersparameters (default None)duplicate_spike_binsto new dafault of 7