Update installation Tips

.github/workflows/installation-tips-test.yml

@@ -0,0 +1,33 @@
+name: Creates Conda Install for Installation Tips
+
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: "0 12 * * 0"  # Weekly at noon UTC on Sundays
+
+jobs:
+  installation-tips-testing:
+    name: Build Conda Env on ${{ matrix.os }} OS
+    runs-on: ${{ matrix.os }}
+    defaults:
+      run:
+        shell: bash -el {0}
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            label: linux_dandi
+          - os: macos-latest
+            label: mac
+          - os: windows-latest
+            label: windows
+    steps:
+    - uses: actions/checkout@v3
+    - uses: actions/setup-python@v4
+      with:
+        python-version: '3.10'
+    - name: Test Conda Environment Creation
+      uses: conda-incubator/[email protected]
+      with:
+        environment-file: ./installations_tips/full_spikeinterface_environment_${{ matrix.label }}.yml

installation_tips/check_your_install.py

@@ -103,8 +103,8 @@ def _clean():
         try:
             func()
             done = '...OK'
-        except:
-            done = '...Fail'
+        except Exception as err:
+            done = f'...Fail, Error: {err}'
         print(label, done)
 
     if platform.system() == "Windows":

installation_tips/full_spikeinterface_environment_linux_dandi.yml

@@ -3,13 +3,11 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - python=3.9
+  - python=3.10
   - pip>=21.0
   - mamba
-  # numpy 1.22 break numba which break tridesclous
   - numpy<1.22
-  # joblib 1.2 is breaking hdbscan
-  - joblib=1.1
+  - joblib
   - tqdm
   - matplotlib
   - h5py
@@ -31,12 +29,11 @@ dependencies:
   - ipympl
   - pip:
     - ephyviewer
-    - neo>=0.11
-    - elephant>=0.10.0
+    - neo>=0.12
     - probeinterface>=0.2.11
     - MEArec>=1.8
     - spikeinterface[full, widgets]
     - spikeinterface-gui
-    - tridesclous>=1.6.6.1
+    - tridesclous>=1.6.8
     - spyking-circus>=1.1.0
     # - phy==2.0b5

installation_tips/full_spikeinterface_environment_mac.yml

@@ -3,12 +3,10 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - python=3.9
+  - python=3.10
   - pip>=21.0
-  # numpy 1.21 break numba which break tridesclous
-  - numpy<1.22
-  # joblib 1.2 is breaking hdbscan
-  - joblib=1.1
+  - numpy
+  - joblib
   - tqdm
   - matplotlib
   - h5py
@@ -30,13 +28,12 @@ dependencies:
   - pip:
 #    - PyQt5
     - ephyviewer
-    - neo>=0.11
-    - elephant>=0.10.0
+    - neo>=0.12
     - probeinterface>=0.2.11
     - MEArec>=1.8
     - spikeinterface[full, widgets]
     - spikeinterface-gui
-    - tridesclous>=1.6.6.1
+    - tridesclous>=1.6.8
     # - phy==2.0b5
-    - mountainsort4>=1.0.0
-    - mountainsort5>=0.3.0
+    # - mountainsort4>=1.0.0 isosplit5 fails on pip install for mac
+    # - mountainsort5>=0.3.0

installation_tips/full_spikeinterface_environment_windows.yml

@@ -3,12 +3,11 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - python=3.9
+  - python=3.10
   - pip>=21.0
   # numpy 1.21 break numba which break tridesclous
-  - numpy<1.22
-  # joblib 1.2 is breaking hdbscan
-  - joblib=1.1
+  - numpy
+  - joblib
   - tqdm
   - matplotlib
   - h5py
@@ -26,11 +25,10 @@ dependencies:
   - ipympl
   - pip:
     - ephyviewer
-    - neo>=0.11
-    - elephant>=0.10.0
+    - neo>=0.12
     - probeinterface>=0.2.11
     - MEArec>=1.8
     - spikeinterface[full, widgets]
     - spikeinterface-gui
-    - tridesclous>=1.6.6.1
+    - tridesclous>=1.6.8
     # - phy==2.0b5