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Implement split/merge/clean cluster before template matching. #1884

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wants to merge 27 commits into from
Closed

Implement split/merge/clean cluster before template matching. #1884

wants to merge 27 commits into from

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samuelgarcia
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@samuelgarcia samuelgarcia commented Jul 26, 2023 •
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This is a port:

@cwindolf : I would be happy to discuss this with you one day.

  • split : prallel multi method split. Working
  • merge: done but needimprovement
  • clean:
  • tools : manipulate sparse waveforms or pca buffer to aogne then on demand

This will need #1799 before I continue.

samuelgarcia and others added 14 commits July 12, 2023 18:14
@samuelgarcia
Proof of concept of split cluster in sortingcomponents
36bda20
@samuelgarcia
skeleton of merge_cluster()
0b24143
@samuelgarcia
Merge branch 'main' of github.com:SpikeInterface/spikeinterface into …
f478abe 
…split_merge
@samuelgarcia
play with svd
dae9311
@samuelgarcia
Small test around tsvd
25243d1
@samuelgarcia
wip split_clusters()
4a2ce51
@samuelgarcia
wip
19679bb
@samuelgarcia
wip auto merge
63ef5db
@samuelgarcia
wip merge cluster
5d499a5
@samuelgarcia
Merge branch 'main' of github.com:SpikeInterface/spikeinterface into …
65ce813 
…split_merge
@samuelgarcia
Some clean in split/merge/tools
17d6cd7
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
b5fd4ec 
for more information, see https://pre-commit.ci
@samuelgarcia
Merge branch 'main' of github.com:SpikeInterface/spikeinterface into …
5dcf4b0 
…split_merge
@samuelgarcia
Merge branch 'split_merge' of github.com:samuelgarcia/spikeinterface …
5a119ab 
…into split_merge
@alejoe91 alejoe91 added the sortingcomponents Related to sortingcomponents module label Jul 27, 2023
samuelgarcia and others added 13 commits July 28, 2023 11:05
@samuelgarcia
wip on peak shift in subgraph
64e9a90
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
44a21ac 
for more information, see https://pre-commit.ci
@samuelgarcia
refactor peak shift resolve
3593d89
@samuelgarcia
merge
4f825c6
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
3e860e3 
for more information, see https://pre-commit.ci
@samuelgarcia
some fix
c98893e
@samuelgarcia
clean
5cf40ff
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
bafbc18 
for more information, see https://pre-commit.ci
@samuelgarcia
merge with main and propagate change to core/node_pipeline
f0dcfab
@samuelgarcia
Merge branch 'main' of github.com:SpikeInterface/spikeinterface into …
e5909a9 
…split_merge

# Conflicts:
#	src/spikeinterface/sortingcomponents/peak_pipeline.py
@samuelgarcia
Merge branch 'split_merge' of github.com:samuelgarcia/spikeinterface …
8de9d53 
…into split_merge
@samuelgarcia
wip merge agglomerate_pairs graph
0e470c2
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
7b59562 
for more information, see https://pre-commit.ci
@samuelgarcia samuelgarcia mentioned this pull request Sep 14, 2023
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Close by #1996

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@samuelgarcia @alejoe91