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Addition of a Template objects and refactor of matching engines #1527

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fb8fc4b
WIP
yger Apr 12, 2023
72679e5
Begin to factorize the sparsity for all matching methods
yger Apr 12, 2023
2a0cba0
Adding the sparsity to all engines. Dealing with wobble soon
yger Apr 12, 2023
19cafe6
Refactor
yger Apr 13, 2023
69ea464
Merge branch 'main' into wobble_patch
alejoe91 Apr 14, 2023
75b4795
Merge branch 'main' into wobble_patch
h-mayorquin Apr 17, 2023
4a4fe84
Merge branch 'main' into wobble_patch
yger Apr 25, 2023
5351a1f
Patch
yger Apr 25, 2023
88afdbf
Merge branch 'wobble_patch' of github.com:yger/spikeinterface into wo…
yger Apr 25, 2023
6198416
Merge branch 'SpikeInterface:main' into wobble_patch
yger Apr 27, 2023
d16a97f
Merge branch 'SpikeInterface:main' into wobble_patch
yger May 9, 2023
23c5429
Merge branch 'main' into fix_yger
h-mayorquin May 16, 2023
7deca6a
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] May 16, 2023
6d281d0
fix tdc
h-mayorquin May 16, 2023
df095f7
Merge pull request #47 from h-mayorquin/fix_yger
yger May 16, 2023
64eb42c
Merge branch 'SpikeInterface:main' into wobble_patch
yger May 17, 2023
e6b0b31
Merge branch 'SpikeInterface:main' into wobble_patch
yger May 23, 2023
aef66b7
Merge branch 'SpikeInterface:main' into wobble_patch
yger May 24, 2023
7121486
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] May 24, 2023
d9efa43
WIP for matching objects
yger May 24, 2023
f7d5018
Addition of a TemplatesDictionary object
yger May 24, 2023
c188ef4
Merge branch 'wobble_patch' of github.com:yger/spikeinterface into wo…
yger May 24, 2023
66fa4e7
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] May 24, 2023
2f17e14
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] May 24, 2023
9cb1c40
Formatting
yger May 24, 2023
8671331
Simplication
yger May 24, 2023
72a219e
Merge branch 'wobble_patch' of github.com:yger/spikeinterface into wo…
yger May 24, 2023
4e196b9
Simplication
yger May 24, 2023
fee02b0
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] May 24, 2023
ef35672
Forgot noise levels for omp
yger May 25, 2023
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2 changes: 1 addition & 1 deletion doc/modules/core.rst
Original file line number Diff line number Diff line change
Expand Up @@ -247,7 +247,7 @@ Finally, an existing :py:class:`~spikeinterface.core.WaveformExtractor` can be s


**IMPORTANT:** to load a waveform extractor object from disk, it needs to be able to reload the associated
:code:`sorting` object (the :code:`recording` is optional, using :code:`with_recording=False`).
:code:`sorting` object (the :code:`recording` is optional, using :code:`with_recording=False`).
In order to make a waveform folder portable (e.g. copied to another location or machine), one can do:

.. code-block:: python
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Original file line number Diff line number Diff line change
Expand Up @@ -63,7 +63,7 @@ def __del__(self):
def run(self):
t_start = time.time()
self.spikes = find_spikes_from_templates(
self.recording, method=self.method, method_kwargs=self.method_kwargs, **self.job_kwargs
self.recording, self.we, method=self.method, method_kwargs=self.method_kwargs, **self.job_kwargs
)
self.run_time = time.time() - t_start
self.sorting = NumpySorting.from_times_labels(
Expand Down
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