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[pre-commit.ci] auto fixes from pre-commit.com hooks
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pre-commit-ci[bot] committed Oct 16, 2024
1 parent c26b719 commit 9692fb0
Showing 1 changed file with 21 additions and 21 deletions.
42 changes: 21 additions & 21 deletions src/spikeinterface/curation/auto_merge.py
Original file line number Diff line number Diff line change
Expand Up @@ -32,27 +32,27 @@


_default_step_params = {
"num_spikes": {"min_spikes": 100},
"snr": {"min_snr": 2},
"remove_contaminated": {"contamination_thresh": 0.2, "refractory_period_ms": 1.0, "censored_period_ms": 0.3},
"unit_locations": {"max_distance_um": 50},
"correlogram": {
"corr_diff_thresh": 0.16,
"censor_correlograms_ms": 0.3,
"sigma_smooth_ms": 0.6,
"adaptative_window_thresh": 0.5,
},
"template_similarity": {"template_diff_thresh": 0.25},
"presence_distance": {"presence_distance_thresh": 100},
"knn": {"k_nn": 10},
"cross_contamination": {
"cc_thresh": 0.1,
"p_value": 0.2,
"refractory_period_ms": 1.0,
"censored_period_ms": 0.3,
},
"quality_score": {"firing_contamination_balance": 2.5, "refractory_period_ms": 1.0, "censored_period_ms": 0.3},
}
"num_spikes": {"min_spikes": 100},
"snr": {"min_snr": 2},
"remove_contaminated": {"contamination_thresh": 0.2, "refractory_period_ms": 1.0, "censored_period_ms": 0.3},
"unit_locations": {"max_distance_um": 50},
"correlogram": {
"corr_diff_thresh": 0.16,
"censor_correlograms_ms": 0.3,
"sigma_smooth_ms": 0.6,
"adaptative_window_thresh": 0.5,
},
"template_similarity": {"template_diff_thresh": 0.25},
"presence_distance": {"presence_distance_thresh": 100},
"knn": {"k_nn": 10},
"cross_contamination": {
"cc_thresh": 0.1,
"p_value": 0.2,
"refractory_period_ms": 1.0,
"censored_period_ms": 0.3,
},
"quality_score": {"firing_contamination_balance": 2.5, "refractory_period_ms": 1.0, "censored_period_ms": 0.3},
}


def auto_merges(
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