change to src structure and test change

SpikeInterface · Apr 5, 2023 · 52c0657 · 52c0657
1 parent a52c128
commit 52c0657
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Showing 484 changed files with 28 additions and 5 deletions.
diff --git a/.github/workflows/caches_cron_job.yml b/.github/workflows/caches_cron_job.yml
@@ -5,6 +5,7 @@ on:
   push:  # When someting is pushed into main this checks if caches need to re-created
     branches:
       - master
+      - main
   schedule:
     - cron: "0 12 * * *"  # Daily at noon UTC
 

diff --git a/.github/workflows/core-test.yml b/.github/workflows/core-test.yml
@@ -3,6 +3,9 @@ name: Testing core
 on:
   pull_request:
     types: [synchronize, opened, reopened]
+    branches:
+      - master
+      - main
 
 concurrency:  # Cancel previous workflows on the same pull request
   group: ${{ github.workflow }}-${{ github.ref }}
@@ -29,7 +32,7 @@ jobs:
           pip install -e .[test_core]
       - name: Test core with pytest
         run: |
-          pytest -vv -ra --durations=0 --durations-min=0.001 spikeinterface/core | tee report.txt; test ${PIPESTATUS[0]} -eq 0 || exit 1
+          pytest -vv -ra --durations=0 --durations-min=0.001 src/spikeinterface/core | tee report.txt; test ${PIPESTATUS[0]} -eq 0 || exit 1
         shell: bash  # Necessary for pipeline to work on windows
       - name: Build test summary
         run: | 

diff --git a/.github/workflows/full-test.yml b/.github/workflows/full-test.yml
@@ -3,7 +3,10 @@ name: Full spikeinterface tests
 on:
   pull_request:
     types: [synchronize, opened, reopened]
-
+    branches:
+      - master
+      - main
+
 concurrency:  # Cancel previous workflows on the same pull request
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true

diff --git a/.github/workflows/s3-nwb-test.yml b/.github/workflows/s3-nwb-test.yml
@@ -2,7 +2,9 @@ name: S3 NWB Test
 on:
   pull_request:
     types: [synchronize, opened, reopened]
-
+    branches:
+      - master
+      - main
 concurrency:  # Cancel previous workflows on the same pull request
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
@@ -44,4 +46,4 @@ jobs:
       - name: Install fsspec, aiohttp and requests
         run: pip install fsspec aiohttp requests
       - name: run tests
-        run: pytest spikeinterface/extractors/tests/test_nwb_s3_extractor.py
+        run: pytest src/spikeinterface/extractors/tests/test_nwb_s3_extractor.py
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -0,0 +1,12 @@
+repos:
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks:
+    -   id: check-yaml
+    -   id: end-of-file-fixer
+    -   id: trailing-whitespace
+-   repo: https://github.com/psf/black
+    rev: 23.1.0
+    hooks:
+    -   id: black
+        exclude: '^(doc|examples|spikeinterface|installation_tips)/'
diff --git a/pyproject.toml b/pyproject.toml
@@ -39,11 +39,13 @@ package-data = {"spikeinterface.sorters" = ["**/*.m", "**/*.prm", "**/*.params",
 spikeinterface = ["**/tests/test_*"]
 
 [tool.setuptools.packages.find]
-where = ["."]
+where = ["src"]
 include = ["spikeinterface*"]
 namespaces = false
 exclude = ["spikeinterface.*.tests"]
 
+[tool.black]
+line-length = 120
 
 [project.urls]
 homepage = "https://github.com/SpikeInterface/spikeinterface"

diff --git a/spikeinterface/__init__.py → src/spikeinterface/__init__.py b/spikeinterface/__init__.py → src/spikeinterface/__init__.py
diff --git a/spikeinterface/comparison/__init__.py → src/spikeinterface/comparison/__init__.py b/spikeinterface/comparison/__init__.py → src/spikeinterface/comparison/__init__.py
diff --git a/spikeinterface/comparison/basecomparison.py → ...ikeinterface/comparison/basecomparison.py b/spikeinterface/comparison/basecomparison.py → ...ikeinterface/comparison/basecomparison.py
diff --git a/...terface/comparison/collisioncomparison.py → ...terface/comparison/collisioncomparison.py b/...terface/comparison/collisioncomparison.py → ...terface/comparison/collisioncomparison.py
diff --git a/spikeinterface/comparison/collisionstudy.py → ...ikeinterface/comparison/collisionstudy.py b/spikeinterface/comparison/collisionstudy.py → ...ikeinterface/comparison/collisionstudy.py
diff --git a/spikeinterface/comparison/comparisontools.py → ...keinterface/comparison/comparisontools.py b/spikeinterface/comparison/comparisontools.py → ...keinterface/comparison/comparisontools.py
diff --git a/...rface/comparison/correlogramcomparison.py → ...rface/comparison/correlogramcomparison.py b/...rface/comparison/correlogramcomparison.py → ...rface/comparison/correlogramcomparison.py
diff --git a/...einterface/comparison/correlogramstudy.py → ...einterface/comparison/correlogramstudy.py b/...einterface/comparison/correlogramstudy.py → ...einterface/comparison/correlogramstudy.py
diff --git a/...einterface/comparison/groundtruthstudy.py → ...einterface/comparison/groundtruthstudy.py b/...einterface/comparison/groundtruthstudy.py → ...einterface/comparison/groundtruthstudy.py
diff --git a/spikeinterface/comparison/hybrid.py → src/spikeinterface/comparison/hybrid.py b/spikeinterface/comparison/hybrid.py → src/spikeinterface/comparison/hybrid.py
diff --git a/...einterface/comparison/multicomparisons.py → ...einterface/comparison/multicomparisons.py b/...einterface/comparison/multicomparisons.py → ...einterface/comparison/multicomparisons.py
diff --git a/spikeinterface/comparison/paircomparisons.py → ...keinterface/comparison/paircomparisons.py b/spikeinterface/comparison/paircomparisons.py → ...keinterface/comparison/paircomparisons.py
diff --git a/spikeinterface/comparison/studytools.py → src/spikeinterface/comparison/studytools.py b/spikeinterface/comparison/studytools.py → src/spikeinterface/comparison/studytools.py
diff --git a/spikeinterface/comparison/tests/.gitignore → ...pikeinterface/comparison/tests/.gitignore b/spikeinterface/comparison/tests/.gitignore → ...pikeinterface/comparison/tests/.gitignore
diff --git a/.../comparison/tests/test_comparisontools.py → .../comparison/tests/test_comparisontools.py b/.../comparison/tests/test_comparisontools.py → .../comparison/tests/test_comparisontools.py
diff --git a/...rison/tests/test_groundtruthcomparison.py → ...rison/tests/test_groundtruthcomparison.py b/...rison/tests/test_groundtruthcomparison.py → ...rison/tests/test_groundtruthcomparison.py
diff --git a/...comparison/tests/test_groundtruthstudy.py → ...comparison/tests/test_groundtruthstudy.py b/...comparison/tests/test_groundtruthstudy.py → ...comparison/tests/test_groundtruthstudy.py
diff --git a/...interface/comparison/tests/test_hybrid.py → ...interface/comparison/tests/test_hybrid.py b/...interface/comparison/tests/test_hybrid.py → ...interface/comparison/tests/test_hybrid.py
diff --git a/...ison/tests/test_multisortingcomparison.py → ...ison/tests/test_multisortingcomparison.py b/...ison/tests/test_multisortingcomparison.py → ...ison/tests/test_multisortingcomparison.py
diff --git a/...rface/comparison/tests/test_studytools.py → ...rface/comparison/tests/test_studytools.py b/...rface/comparison/tests/test_studytools.py → ...rface/comparison/tests/test_studytools.py
diff --git a/.../tests/test_symmetricsortingcomparison.py → .../tests/test_symmetricsortingcomparison.py b/.../tests/test_symmetricsortingcomparison.py → .../tests/test_symmetricsortingcomparison.py
diff --git a/...mparison/tests/test_templatecomparison.py → ...mparison/tests/test_templatecomparison.py b/...mparison/tests/test_templatecomparison.py → ...mparison/tests/test_templatecomparison.py
diff --git a/spikeinterface/core/__init__.py → src/spikeinterface/core/__init__.py b/spikeinterface/core/__init__.py → src/spikeinterface/core/__init__.py
diff --git a/spikeinterface/core/base.py → src/spikeinterface/core/base.py b/spikeinterface/core/base.py → src/spikeinterface/core/base.py
diff --git a/spikeinterface/core/baseevent.py → src/spikeinterface/core/baseevent.py b/spikeinterface/core/baseevent.py → src/spikeinterface/core/baseevent.py
diff --git a/spikeinterface/core/baserecording.py → src/spikeinterface/core/baserecording.py b/spikeinterface/core/baserecording.py → src/spikeinterface/core/baserecording.py
diff --git a/spikeinterface/core/baserecordingsnippets.py → ...keinterface/core/baserecordingsnippets.py b/spikeinterface/core/baserecordingsnippets.py → ...keinterface/core/baserecordingsnippets.py
diff --git a/spikeinterface/core/basesnippets.py → src/spikeinterface/core/basesnippets.py b/spikeinterface/core/basesnippets.py → src/spikeinterface/core/basesnippets.py
diff --git a/spikeinterface/core/basesorting.py → src/spikeinterface/core/basesorting.py b/spikeinterface/core/basesorting.py → src/spikeinterface/core/basesorting.py
diff --git a/spikeinterface/core/binaryfolder.py → src/spikeinterface/core/binaryfolder.py b/spikeinterface/core/binaryfolder.py → src/spikeinterface/core/binaryfolder.py
diff --git a/...nterface/core/binaryrecordingextractor.py → ...nterface/core/binaryrecordingextractor.py b/...nterface/core/binaryrecordingextractor.py → ...nterface/core/binaryrecordingextractor.py
diff --git a/...face/core/channelsaggregationrecording.py → ...face/core/channelsaggregationrecording.py b/...face/core/channelsaggregationrecording.py → ...face/core/channelsaggregationrecording.py
diff --git a/spikeinterface/core/channelslice.py → src/spikeinterface/core/channelslice.py b/spikeinterface/core/channelslice.py → src/spikeinterface/core/channelslice.py
diff --git a/spikeinterface/core/core_tools.py → src/spikeinterface/core/core_tools.py b/spikeinterface/core/core_tools.py → src/spikeinterface/core/core_tools.py
diff --git a/spikeinterface/core/datasets.py → src/spikeinterface/core/datasets.py b/spikeinterface/core/datasets.py → src/spikeinterface/core/datasets.py
diff --git a/spikeinterface/core/frameslicerecording.py → ...pikeinterface/core/frameslicerecording.py b/spikeinterface/core/frameslicerecording.py → ...pikeinterface/core/frameslicerecording.py
diff --git a/spikeinterface/core/frameslicesorting.py → src/spikeinterface/core/frameslicesorting.py b/spikeinterface/core/frameslicesorting.py → src/spikeinterface/core/frameslicesorting.py
diff --git a/spikeinterface/core/generate.py → src/spikeinterface/core/generate.py b/spikeinterface/core/generate.py → src/spikeinterface/core/generate.py
diff --git a/spikeinterface/core/globals.py → src/spikeinterface/core/globals.py b/spikeinterface/core/globals.py → src/spikeinterface/core/globals.py
diff --git a/spikeinterface/core/injecttemplates.py → src/spikeinterface/core/injecttemplates.py b/spikeinterface/core/injecttemplates.py → src/spikeinterface/core/injecttemplates.py
diff --git a/spikeinterface/core/job_tools.py → src/spikeinterface/core/job_tools.py b/spikeinterface/core/job_tools.py → src/spikeinterface/core/job_tools.py
diff --git a/spikeinterface/core/npyfoldersnippets.py → src/spikeinterface/core/npyfoldersnippets.py b/spikeinterface/core/npyfoldersnippets.py → src/spikeinterface/core/npyfoldersnippets.py
diff --git a/spikeinterface/core/npysnippetsextractor.py → ...ikeinterface/core/npysnippetsextractor.py b/spikeinterface/core/npysnippetsextractor.py → ...ikeinterface/core/npysnippetsextractor.py
diff --git a/spikeinterface/core/npzfolder.py → src/spikeinterface/core/npzfolder.py b/spikeinterface/core/npzfolder.py → src/spikeinterface/core/npzfolder.py
diff --git a/spikeinterface/core/npzsortingextractor.py → ...pikeinterface/core/npzsortingextractor.py b/spikeinterface/core/npzsortingextractor.py → ...pikeinterface/core/npzsortingextractor.py
diff --git a/spikeinterface/core/numpyextractors.py → src/spikeinterface/core/numpyextractors.py b/spikeinterface/core/numpyextractors.py → src/spikeinterface/core/numpyextractors.py
diff --git a/spikeinterface/core/old_api_utils.py → src/spikeinterface/core/old_api_utils.py b/spikeinterface/core/old_api_utils.py → src/spikeinterface/core/old_api_utils.py
diff --git a/spikeinterface/core/recording_tools.py → src/spikeinterface/core/recording_tools.py b/spikeinterface/core/recording_tools.py → src/spikeinterface/core/recording_tools.py
diff --git a/spikeinterface/core/segmentutils.py → src/spikeinterface/core/segmentutils.py b/spikeinterface/core/segmentutils.py → src/spikeinterface/core/segmentutils.py
diff --git a/spikeinterface/core/snippets_tools.py → src/spikeinterface/core/snippets_tools.py b/spikeinterface/core/snippets_tools.py → src/spikeinterface/core/snippets_tools.py
diff --git a/spikeinterface/core/sparsity.py → src/spikeinterface/core/sparsity.py b/spikeinterface/core/sparsity.py → src/spikeinterface/core/sparsity.py
diff --git a/spikeinterface/core/template_tools.py → src/spikeinterface/core/template_tools.py b/spikeinterface/core/template_tools.py → src/spikeinterface/core/template_tools.py
diff --git a/spikeinterface/core/testing.py → src/spikeinterface/core/testing.py b/spikeinterface/core/testing.py → src/spikeinterface/core/testing.py
diff --git a/spikeinterface/core/testing_tools.py → src/spikeinterface/core/testing_tools.py b/spikeinterface/core/testing_tools.py → src/spikeinterface/core/testing_tools.py
diff --git a/...nterface/core/tests/test_baserecording.py → ...nterface/core/tests/test_baserecording.py b/...nterface/core/tests/test_baserecording.py → ...nterface/core/tests/test_baserecording.py
diff --git a/...interface/core/tests/test_basesnippets.py → ...interface/core/tests/test_basesnippets.py b/...interface/core/tests/test_basesnippets.py → ...interface/core/tests/test_basesnippets.py
diff --git a/...einterface/core/tests/test_basesorting.py → ...einterface/core/tests/test_basesorting.py b/...einterface/core/tests/test_basesorting.py → ...einterface/core/tests/test_basesorting.py
diff --git a/...interface/core/tests/test_binaryfolder.py → ...interface/core/tests/test_binaryfolder.py b/...interface/core/tests/test_binaryfolder.py → ...interface/core/tests/test_binaryfolder.py
diff --git a/...re/tests/test_binaryrecordingextractor.py → ...re/tests/test_binaryrecordingextractor.py b/...re/tests/test_binaryrecordingextractor.py → ...re/tests/test_binaryrecordingextractor.py
diff --git a/...ests/test_channelsaggregationrecording.py → ...ests/test_channelsaggregationrecording.py b/...ests/test_channelsaggregationrecording.py → ...ests/test_channelsaggregationrecording.py
diff --git a/.../core/tests/test_channelslicerecording.py → .../core/tests/test_channelslicerecording.py b/.../core/tests/test_channelslicerecording.py → .../core/tests/test_channelslicerecording.py
diff --git a/spikeinterface/core/tests/test_core_tools.py → ...keinterface/core/tests/test_core_tools.py b/spikeinterface/core/tests/test_core_tools.py → ...keinterface/core/tests/test_core_tools.py
diff --git a/spikeinterface/core/tests/test_datasets.py → ...pikeinterface/core/tests/test_datasets.py b/spikeinterface/core/tests/test_datasets.py → ...pikeinterface/core/tests/test_datasets.py
diff --git a/...ce/core/tests/test_frameslicerecording.py → ...ce/core/tests/test_frameslicerecording.py b/...ce/core/tests/test_frameslicerecording.py → ...ce/core/tests/test_frameslicerecording.py
diff --git a/...face/core/tests/test_frameslicesorting.py → ...face/core/tests/test_frameslicesorting.py b/...face/core/tests/test_frameslicesorting.py → ...face/core/tests/test_frameslicesorting.py
diff --git a/spikeinterface/core/tests/test_generate.py → ...pikeinterface/core/tests/test_generate.py b/spikeinterface/core/tests/test_generate.py → ...pikeinterface/core/tests/test_generate.py
diff --git a/spikeinterface/core/tests/test_globals.py → ...spikeinterface/core/tests/test_globals.py b/spikeinterface/core/tests/test_globals.py → ...spikeinterface/core/tests/test_globals.py
diff --git a/...erface/core/tests/test_injecttemplates.py → ...erface/core/tests/test_injecttemplates.py b/...erface/core/tests/test_injecttemplates.py → ...erface/core/tests/test_injecttemplates.py
diff --git a/spikeinterface/core/tests/test_job_tools.py → ...ikeinterface/core/tests/test_job_tools.py b/spikeinterface/core/tests/test_job_tools.py → ...ikeinterface/core/tests/test_job_tools.py
diff --git a/...nterface/core/tests/test_jsonification.py → ...nterface/core/tests/test_jsonification.py b/...nterface/core/tests/test_jsonification.py → ...nterface/core/tests/test_jsonification.py
diff --git a/...face/core/tests/test_npyfoldersnippets.py → ...face/core/tests/test_npyfoldersnippets.py b/...face/core/tests/test_npyfoldersnippets.py → ...face/core/tests/test_npyfoldersnippets.py
diff --git a/...e/core/tests/test_npysnippetsextractor.py → ...e/core/tests/test_npysnippetsextractor.py b/...e/core/tests/test_npysnippetsextractor.py → ...e/core/tests/test_npysnippetsextractor.py
diff --git a/...ce/core/tests/test_npzsortingextractor.py → ...ce/core/tests/test_npzsortingextractor.py b/...ce/core/tests/test_npzsortingextractor.py → ...ce/core/tests/test_npzsortingextractor.py
diff --git a/...rface/core/tests/test_numpy_extractors.py → ...rface/core/tests/test_numpy_extractors.py b/...rface/core/tests/test_numpy_extractors.py → ...rface/core/tests/test_numpy_extractors.py
diff --git a/...erface/core/tests/test_recording_tools.py → ...erface/core/tests/test_recording_tools.py b/...erface/core/tests/test_recording_tools.py → ...erface/core/tests/test_recording_tools.py
diff --git a/...interface/core/tests/test_segmentutils.py → ...interface/core/tests/test_segmentutils.py b/...interface/core/tests/test_segmentutils.py → ...interface/core/tests/test_segmentutils.py
diff --git a/spikeinterface/core/tests/test_sparsity.py → ...pikeinterface/core/tests/test_sparsity.py b/spikeinterface/core/tests/test_sparsity.py → ...pikeinterface/core/tests/test_sparsity.py
diff --git a/...terface/core/tests/test_template_tools.py → ...terface/core/tests/test_template_tools.py b/...terface/core/tests/test_template_tools.py → ...terface/core/tests/test_template_tools.py
diff --git a/...nterface/core/tests/test_time_handling.py → ...nterface/core/tests/test_time_handling.py b/...nterface/core/tests/test_time_handling.py → ...nterface/core/tests/test_time_handling.py
diff --git a/...ore/tests/test_unitsaggregationsorting.py → ...ore/tests/test_unitsaggregationsorting.py b/...ore/tests/test_unitsaggregationsorting.py → ...ore/tests/test_unitsaggregationsorting.py
diff --git a/.../core/tests/test_unitsselectionsorting.py → .../core/tests/test_unitsselectionsorting.py b/.../core/tests/test_unitsselectionsorting.py → .../core/tests/test_unitsselectionsorting.py
diff --git a/...ace/core/tests/test_waveform_extractor.py → ...ace/core/tests/test_waveform_extractor.py b/...ace/core/tests/test_waveform_extractor.py → ...ace/core/tests/test_waveform_extractor.py
diff --git a/...terface/core/tests/test_waveform_tools.py → ...terface/core/tests/test_waveform_tools.py b/...terface/core/tests/test_waveform_tools.py → ...terface/core/tests/test_waveform_tools.py
diff --git a/...interface/core/unitsaggregationsorting.py → ...interface/core/unitsaggregationsorting.py b/...interface/core/unitsaggregationsorting.py → ...interface/core/unitsaggregationsorting.py
diff --git a/spikeinterface/core/unitsselectionsorting.py → ...keinterface/core/unitsselectionsorting.py b/spikeinterface/core/unitsselectionsorting.py → ...keinterface/core/unitsselectionsorting.py
diff --git a/spikeinterface/core/waveform_extractor.py → ...spikeinterface/core/waveform_extractor.py b/spikeinterface/core/waveform_extractor.py → ...spikeinterface/core/waveform_extractor.py
diff --git a/spikeinterface/core/waveform_tools.py → src/spikeinterface/core/waveform_tools.py b/spikeinterface/core/waveform_tools.py → src/spikeinterface/core/waveform_tools.py
diff --git a/...einterface/core/zarrrecordingextractor.py → ...einterface/core/zarrrecordingextractor.py b/...einterface/core/zarrrecordingextractor.py → ...einterface/core/zarrrecordingextractor.py
diff --git a/spikeinterface/curation/__init__.py → src/spikeinterface/curation/__init__.py b/spikeinterface/curation/__init__.py → src/spikeinterface/curation/__init__.py
diff --git a/spikeinterface/curation/auto_merge.py → src/spikeinterface/curation/auto_merge.py b/spikeinterface/curation/auto_merge.py → src/spikeinterface/curation/auto_merge.py
diff --git a/spikeinterface/curation/curation_tools.py → ...spikeinterface/curation/curation_tools.py b/spikeinterface/curation/curation_tools.py → ...spikeinterface/curation/curation_tools.py
diff --git a/spikeinterface/curation/curationsorting.py → ...pikeinterface/curation/curationsorting.py b/spikeinterface/curation/curationsorting.py → ...pikeinterface/curation/curationsorting.py
diff --git a/spikeinterface/curation/mergeunitssorting.py → ...keinterface/curation/mergeunitssorting.py b/spikeinterface/curation/mergeunitssorting.py → ...keinterface/curation/mergeunitssorting.py
diff --git a/...face/curation/remove_duplicated_spikes.py → ...face/curation/remove_duplicated_spikes.py b/...face/curation/remove_duplicated_spikes.py → ...face/curation/remove_duplicated_spikes.py
diff --git a/...nterface/curation/remove_excess_spikes.py → ...nterface/curation/remove_excess_spikes.py b/...nterface/curation/remove_excess_spikes.py → ...nterface/curation/remove_excess_spikes.py
diff --git a/spikeinterface/curation/remove_redundant.py → ...ikeinterface/curation/remove_redundant.py b/spikeinterface/curation/remove_redundant.py → ...ikeinterface/curation/remove_redundant.py
diff --git a/...nterface/curation/sortingview_curation.py → ...nterface/curation/sortingview_curation.py b/...nterface/curation/sortingview_curation.py → ...nterface/curation/sortingview_curation.py
diff --git a/spikeinterface/curation/splitunitsorting.py → ...ikeinterface/curation/splitunitsorting.py b/spikeinterface/curation/splitunitsorting.py → ...ikeinterface/curation/splitunitsorting.py
diff --git a/...e/curation/tests/sv-sorting-curation.json → ...e/curation/tests/sv-sorting-curation.json b/...e/curation/tests/sv-sorting-curation.json → ...e/curation/tests/sv-sorting-curation.json
diff --git a/...terface/curation/tests/test_auto_merge.py → ...terface/curation/tests/test_auto_merge.py b/...terface/curation/tests/test_auto_merge.py → ...terface/curation/tests/test_auto_merge.py
diff --git a/...ce/curation/tests/test_curationsorting.py → ...ce/curation/tests/test_curationsorting.py b/...ce/curation/tests/test_curationsorting.py → ...ce/curation/tests/test_curationsorting.py
diff --git a/...on/tests/test_remove_duplicated_spikes.py → ...on/tests/test_remove_duplicated_spikes.py b/...on/tests/test_remove_duplicated_spikes.py → ...on/tests/test_remove_duplicated_spikes.py
diff --git a/...ration/tests/test_remove_excess_spikes.py → ...ration/tests/test_remove_excess_spikes.py b/...ration/tests/test_remove_excess_spikes.py → ...ration/tests/test_remove_excess_spikes.py
diff --git a/...e/curation/tests/test_remove_redundant.py → ...e/curation/tests/test_remove_redundant.py b/...e/curation/tests/test_remove_redundant.py → ...e/curation/tests/test_remove_redundant.py
diff --git a/...ration/tests/test_sortingview_curation.py → ...ration/tests/test_sortingview_curation.py b/...ration/tests/test_sortingview_curation.py → ...ration/tests/test_sortingview_curation.py
diff --git a/spikeinterface/exporters/__init__.py → src/spikeinterface/exporters/__init__.py b/spikeinterface/exporters/__init__.py → src/spikeinterface/exporters/__init__.py
diff --git a/spikeinterface/exporters/report.py → src/spikeinterface/exporters/report.py b/spikeinterface/exporters/report.py → src/spikeinterface/exporters/report.py
diff --git a/...ace/exporters/tests/test_export_to_phy.py → ...ace/exporters/tests/test_export_to_phy.py b/...ace/exporters/tests/test_export_to_phy.py → ...ace/exporters/tests/test_export_to_phy.py
diff --git a/...einterface/exporters/tests/test_report.py → ...einterface/exporters/tests/test_report.py b/...einterface/exporters/tests/test_report.py → ...einterface/exporters/tests/test_report.py
diff --git a/spikeinterface/exporters/to_phy.py → src/spikeinterface/exporters/to_phy.py b/spikeinterface/exporters/to_phy.py → src/spikeinterface/exporters/to_phy.py
diff --git a/spikeinterface/extractors/__init__.py → src/spikeinterface/extractors/__init__.py b/spikeinterface/extractors/__init__.py → src/spikeinterface/extractors/__init__.py
diff --git a/...terface/extractors/alfsortingextractor.py → ...terface/extractors/alfsortingextractor.py b/...terface/extractors/alfsortingextractor.py → ...terface/extractors/alfsortingextractor.py
diff --git a/spikeinterface/extractors/bids.py → src/spikeinterface/extractors/bids.py b/spikeinterface/extractors/bids.py → src/spikeinterface/extractors/bids.py
diff --git a/spikeinterface/extractors/cbin_ibl.py → src/spikeinterface/extractors/cbin_ibl.py b/spikeinterface/extractors/cbin_ibl.py → src/spikeinterface/extractors/cbin_ibl.py
diff --git a/...xtractors/cellexplorersortingextractor.py → ...xtractors/cellexplorersortingextractor.py b/...xtractors/cellexplorersortingextractor.py → ...xtractors/cellexplorersortingextractor.py
diff --git a/...terface/extractors/combinatoextractors.py → ...terface/extractors/combinatoextractors.py b/...terface/extractors/combinatoextractors.py → ...terface/extractors/combinatoextractors.py
diff --git a/spikeinterface/extractors/extractorlist.py → ...pikeinterface/extractors/extractorlist.py b/spikeinterface/extractors/extractorlist.py → ...pikeinterface/extractors/extractorlist.py
diff --git a/...einterface/extractors/hdsortextractors.py → ...einterface/extractors/hdsortextractors.py b/...einterface/extractors/hdsortextractors.py → ...einterface/extractors/hdsortextractors.py
diff --git a/...ace/extractors/herdingspikesextractors.py → ...ace/extractors/herdingspikesextractors.py b/...ace/extractors/herdingspikesextractors.py → ...ace/extractors/herdingspikesextractors.py
diff --git a/...rface/extractors/iblstreamingrecording.py → ...rface/extractors/iblstreamingrecording.py b/...rface/extractors/iblstreamingrecording.py → ...rface/extractors/iblstreamingrecording.py
diff --git a/...einterface/extractors/klustaextractors.py → ...einterface/extractors/klustaextractors.py b/...einterface/extractors/klustaextractors.py → ...einterface/extractors/klustaextractors.py
diff --git a/spikeinterface/extractors/matlabhelpers.py → ...pikeinterface/extractors/matlabhelpers.py b/spikeinterface/extractors/matlabhelpers.py → ...pikeinterface/extractors/matlabhelpers.py
diff --git a/...einterface/extractors/mclustextractors.py → ...einterface/extractors/mclustextractors.py b/...einterface/extractors/mclustextractors.py → ...einterface/extractors/mclustextractors.py
diff --git a/spikeinterface/extractors/mcsh5extractors.py → ...keinterface/extractors/mcsh5extractors.py b/spikeinterface/extractors/mcsh5extractors.py → ...keinterface/extractors/mcsh5extractors.py
diff --git a/spikeinterface/extractors/mdaextractors.py → ...pikeinterface/extractors/mdaextractors.py b/spikeinterface/extractors/mdaextractors.py → ...pikeinterface/extractors/mdaextractors.py
diff --git a/...face/extractors/neoextractors/__init__.py → ...face/extractors/neoextractors/__init__.py b/...face/extractors/neoextractors/__init__.py → ...face/extractors/neoextractors/__init__.py
diff --git a/...ce/extractors/neoextractors/alphaomega.py → ...ce/extractors/neoextractors/alphaomega.py b/...ce/extractors/neoextractors/alphaomega.py → ...ce/extractors/neoextractors/alphaomega.py
diff --git a/...terface/extractors/neoextractors/axona.py → ...terface/extractors/neoextractors/axona.py b/...terface/extractors/neoextractors/axona.py → ...terface/extractors/neoextractors/axona.py
diff --git a/...erface/extractors/neoextractors/biocam.py → ...erface/extractors/neoextractors/biocam.py b/...erface/extractors/neoextractors/biocam.py → ...erface/extractors/neoextractors/biocam.py
diff --git a/...ace/extractors/neoextractors/blackrock.py → ...ace/extractors/neoextractors/blackrock.py b/...ace/extractors/neoextractors/blackrock.py → ...ace/extractors/neoextractors/blackrock.py
diff --git a/...interface/extractors/neoextractors/ced.py → ...interface/extractors/neoextractors/ced.py b/...interface/extractors/neoextractors/ced.py → ...interface/extractors/neoextractors/ced.py
diff --git a/...interface/extractors/neoextractors/edf.py → ...interface/extractors/neoextractors/edf.py b/...interface/extractors/neoextractors/edf.py → ...interface/extractors/neoextractors/edf.py
diff --git a/...terface/extractors/neoextractors/intan.py → ...terface/extractors/neoextractors/intan.py b/...terface/extractors/neoextractors/intan.py → ...terface/extractors/neoextractors/intan.py
diff --git a/...rface/extractors/neoextractors/maxwell.py → ...rface/extractors/neoextractors/maxwell.py b/...rface/extractors/neoextractors/maxwell.py → ...rface/extractors/neoextractors/maxwell.py
diff --git a/...erface/extractors/neoextractors/mcsraw.py → ...erface/extractors/neoextractors/mcsraw.py b/...erface/extractors/neoextractors/mcsraw.py → ...erface/extractors/neoextractors/mcsraw.py
diff --git a/...erface/extractors/neoextractors/mearec.py → ...erface/extractors/neoextractors/mearec.py b/...erface/extractors/neoextractors/mearec.py → ...erface/extractors/neoextractors/mearec.py
diff --git a/...ace/extractors/neoextractors/neo_utils.py → ...ace/extractors/neoextractors/neo_utils.py b/...ace/extractors/neoextractors/neo_utils.py → ...ace/extractors/neoextractors/neo_utils.py
diff --git a/...ractors/neoextractors/neobaseextractor.py → ...ractors/neoextractors/neobaseextractor.py b/...ractors/neoextractors/neobaseextractor.py → ...ractors/neoextractors/neobaseextractor.py
diff --git a/...ace/extractors/neoextractors/neuralynx.py → ...ace/extractors/neoextractors/neuralynx.py b/...ace/extractors/neoextractors/neuralynx.py → ...ace/extractors/neoextractors/neuralynx.py
diff --git a/...ce/extractors/neoextractors/neuroscope.py → ...ce/extractors/neoextractors/neuroscope.py b/...ce/extractors/neoextractors/neuroscope.py → ...ce/extractors/neoextractors/neuroscope.py
diff --git a/...interface/extractors/neoextractors/nix.py → ...interface/extractors/neoextractors/nix.py b/...interface/extractors/neoextractors/nix.py → ...interface/extractors/neoextractors/nix.py
diff --git a/...ace/extractors/neoextractors/openephys.py → ...ace/extractors/neoextractors/openephys.py b/...ace/extractors/neoextractors/openephys.py → ...ace/extractors/neoextractors/openephys.py
diff --git a/...erface/extractors/neoextractors/plexon.py → ...erface/extractors/neoextractors/plexon.py b/...erface/extractors/neoextractors/plexon.py → ...erface/extractors/neoextractors/plexon.py
diff --git a/...erface/extractors/neoextractors/spike2.py → ...erface/extractors/neoextractors/spike2.py b/...erface/extractors/neoextractors/spike2.py → ...erface/extractors/neoextractors/spike2.py
diff --git a/.../extractors/neoextractors/spikegadgets.py → .../extractors/neoextractors/spikegadgets.py b/.../extractors/neoextractors/spikegadgets.py → .../extractors/neoextractors/spikegadgets.py
diff --git a/...face/extractors/neoextractors/spikeglx.py → ...face/extractors/neoextractors/spikeglx.py b/...face/extractors/neoextractors/spikeglx.py → ...face/extractors/neoextractors/spikeglx.py
diff --git a/...interface/extractors/neoextractors/tdt.py → ...interface/extractors/neoextractors/tdt.py b/...interface/extractors/neoextractors/tdt.py → ...interface/extractors/neoextractors/tdt.py
diff --git a/...interface/extractors/neuropixels_utils.py → ...interface/extractors/neuropixels_utils.py b/...interface/extractors/neuropixels_utils.py → ...interface/extractors/neuropixels_utils.py
diff --git a/spikeinterface/extractors/nwbextractors.py → ...pikeinterface/extractors/nwbextractors.py b/spikeinterface/extractors/nwbextractors.py → ...pikeinterface/extractors/nwbextractors.py
diff --git a/...rface/extractors/phykilosortextractors.py → ...rface/extractors/phykilosortextractors.py b/...rface/extractors/phykilosortextractors.py → ...rface/extractors/phykilosortextractors.py
diff --git a/...interface/extractors/shybridextractors.py → ...interface/extractors/shybridextractors.py b/...interface/extractors/shybridextractors.py → ...interface/extractors/shybridextractors.py
diff --git a/...ace/extractors/spykingcircusextractors.py → ...ace/extractors/spykingcircusextractors.py b/...ace/extractors/spykingcircusextractors.py → ...ace/extractors/spykingcircusextractors.py
diff --git a/...nterface/extractors/tests/common_tests.py → ...nterface/extractors/tests/common_tests.py b/...nterface/extractors/tests/common_tests.py → ...nterface/extractors/tests/common_tests.py
diff --git a/...e/extractors/tests/test_bidsextractors.py → ...e/extractors/tests/test_bidsextractors.py b/...e/extractors/tests/test_bidsextractors.py → ...e/extractors/tests/test_bidsextractors.py
diff --git a/...ractors/tests/test_cbin_ibl_extractors.py → ...ractors/tests/test_cbin_ibl_extractors.py b/...ractors/tests/test_cbin_ibl_extractors.py → ...ractors/tests/test_cbin_ibl_extractors.py
diff --git a/...ractors/tests/test_combinatoextractors.py → ...ractors/tests/test_combinatoextractors.py b/...ractors/tests/test_combinatoextractors.py → ...ractors/tests/test_combinatoextractors.py
diff --git a/...extractors/tests/test_hdsortextractors.py → ...extractors/tests/test_hdsortextractors.py b/...extractors/tests/test_hdsortextractors.py → ...extractors/tests/test_hdsortextractors.py
diff --git a/...ors/tests/test_herdingspikesextractors.py → ...ors/tests/test_herdingspikesextractors.py b/...ors/tests/test_herdingspikesextractors.py → ...ors/tests/test_herdingspikesextractors.py
diff --git a/...ctors/tests/test_iblstreamingrecording.py → ...ctors/tests/test_iblstreamingrecording.py b/...ctors/tests/test_iblstreamingrecording.py → ...ctors/tests/test_iblstreamingrecording.py
diff --git a/...extractors/tests/test_klustaextractors.py → ...extractors/tests/test_klustaextractors.py b/...extractors/tests/test_klustaextractors.py → ...extractors/tests/test_klustaextractors.py
diff --git a/...ce/extractors/tests/test_mdaextractors.py → ...ce/extractors/tests/test_mdaextractors.py b/...ce/extractors/tests/test_mdaextractors.py → ...ce/extractors/tests/test_mdaextractors.py
diff --git a/...ce/extractors/tests/test_neoextractors.py → ...ce/extractors/tests/test_neoextractors.py b/...ce/extractors/tests/test_neoextractors.py → ...ce/extractors/tests/test_neoextractors.py
diff --git a/...extractors/tests/test_nwb_s3_extractor.py → ...extractors/tests/test_nwb_s3_extractor.py b/...extractors/tests/test_nwb_s3_extractor.py → ...extractors/tests/test_nwb_s3_extractor.py
diff --git a/...ce/extractors/tests/test_nwbextractors.py → ...ce/extractors/tests/test_nwbextractors.py b/...ce/extractors/tests/test_nwbextractors.py → ...ce/extractors/tests/test_nwbextractors.py
diff --git a/...xtractors/tests/test_shybridextractors.py → ...xtractors/tests/test_shybridextractors.py b/...xtractors/tests/test_shybridextractors.py → ...xtractors/tests/test_shybridextractors.py
diff --git a/...ors/tests/test_spykingcircusextractors.py → ...ors/tests/test_spykingcircusextractors.py b/...ors/tests/test_spykingcircusextractors.py → ...ors/tests/test_spykingcircusextractors.py
diff --git a/...face/extractors/tests/test_toy_example.py → ...face/extractors/tests/test_toy_example.py b/...face/extractors/tests/test_toy_example.py → ...face/extractors/tests/test_toy_example.py
diff --git a/...ctors/tests/test_tridesclousextractors.py → ...ctors/tests/test_tridesclousextractors.py b/...ctors/tests/test_tridesclousextractors.py → ...ctors/tests/test_tridesclousextractors.py
diff --git a/...ractors/tests/test_waveclustextractors.py → ...ractors/tests/test_waveclustextractors.py b/...ractors/tests/test_waveclustextractors.py → ...ractors/tests/test_waveclustextractors.py
diff --git a/...e/extractors/tests/test_yassextractors.py → ...e/extractors/tests/test_yassextractors.py b/...e/extractors/tests/test_yassextractors.py → ...e/extractors/tests/test_yassextractors.py
diff --git a/spikeinterface/extractors/toy_example.py → src/spikeinterface/extractors/toy_example.py b/spikeinterface/extractors/toy_example.py → src/spikeinterface/extractors/toy_example.py
diff --git a/...rface/extractors/tridesclousextractors.py → ...rface/extractors/tridesclousextractors.py b/...rface/extractors/tridesclousextractors.py → ...rface/extractors/tridesclousextractors.py
diff --git a/...extractors/waveclussnippetstextractors.py → ...extractors/waveclussnippetstextractors.py b/...extractors/waveclussnippetstextractors.py → ...extractors/waveclussnippetstextractors.py
diff --git a/...terface/extractors/waveclustextractors.py → ...terface/extractors/waveclustextractors.py b/...terface/extractors/waveclustextractors.py → ...terface/extractors/waveclustextractors.py
diff --git a/spikeinterface/extractors/yassextractors.py → ...ikeinterface/extractors/yassextractors.py b/spikeinterface/extractors/yassextractors.py → ...ikeinterface/extractors/yassextractors.py
diff --git a/spikeinterface/full.py → src/spikeinterface/full.py b/spikeinterface/full.py → src/spikeinterface/full.py
diff --git a/spikeinterface/postprocessing/__init__.py → ...spikeinterface/postprocessing/__init__.py b/spikeinterface/postprocessing/__init__.py → ...spikeinterface/postprocessing/__init__.py
diff --git a/...einterface/postprocessing/alignsorting.py → ...einterface/postprocessing/alignsorting.py b/...einterface/postprocessing/alignsorting.py → ...einterface/postprocessing/alignsorting.py
diff --git a/...einterface/postprocessing/correlograms.py → ...einterface/postprocessing/correlograms.py b/...einterface/postprocessing/correlograms.py → ...einterface/postprocessing/correlograms.py
diff --git a/spikeinterface/postprocessing/isi.py → src/spikeinterface/postprocessing/isi.py b/spikeinterface/postprocessing/isi.py → src/spikeinterface/postprocessing/isi.py
diff --git a/spikeinterface/postprocessing/noise_level.py → ...keinterface/postprocessing/noise_level.py b/spikeinterface/postprocessing/noise_level.py → ...keinterface/postprocessing/noise_level.py
diff --git a/...ace/postprocessing/principal_component.py → ...ace/postprocessing/principal_component.py b/...ace/postprocessing/principal_component.py → ...ace/postprocessing/principal_component.py
diff --git a/...erface/postprocessing/spike_amplitudes.py → ...erface/postprocessing/spike_amplitudes.py b/...erface/postprocessing/spike_amplitudes.py → ...erface/postprocessing/spike_amplitudes.py
diff --git a/...terface/postprocessing/spike_locations.py → ...terface/postprocessing/spike_locations.py b/...terface/postprocessing/spike_locations.py → ...terface/postprocessing/spike_locations.py
diff --git a/...erface/postprocessing/template_metrics.py → ...erface/postprocessing/template_metrics.py b/...erface/postprocessing/template_metrics.py → ...erface/postprocessing/template_metrics.py
diff --git a/...ace/postprocessing/template_similarity.py → ...ace/postprocessing/template_similarity.py b/...ace/postprocessing/template_similarity.py → ...ace/postprocessing/template_similarity.py
diff --git a/...nterface/postprocessing/template_tools.py → ...nterface/postprocessing/template_tools.py b/...nterface/postprocessing/template_tools.py → ...nterface/postprocessing/template_tools.py
diff --git a/...rocessing/tests/common_extension_tests.py → ...rocessing/tests/common_extension_tests.py b/...rocessing/tests/common_extension_tests.py → ...rocessing/tests/common_extension_tests.py
diff --git a/...ostprocessing/tests/test_align_sorting.py → ...ostprocessing/tests/test_align_sorting.py b/...ostprocessing/tests/test_align_sorting.py → ...ostprocessing/tests/test_align_sorting.py
diff --git a/...postprocessing/tests/test_correlograms.py → ...postprocessing/tests/test_correlograms.py b/...postprocessing/tests/test_correlograms.py → ...postprocessing/tests/test_correlograms.py
diff --git a/...nterface/postprocessing/tests/test_isi.py → ...nterface/postprocessing/tests/test_isi.py b/...nterface/postprocessing/tests/test_isi.py → ...nterface/postprocessing/tests/test_isi.py
diff --git a/...postprocessing/tests/test_noise_levels.py → ...postprocessing/tests/test_noise_levels.py b/...postprocessing/tests/test_noise_levels.py → ...postprocessing/tests/test_noise_levels.py
diff --git a/...cessing/tests/test_principal_component.py → ...cessing/tests/test_principal_component.py b/...cessing/tests/test_principal_component.py → ...cessing/tests/test_principal_component.py
diff --git a/...processing/tests/test_spike_amplitudes.py → ...processing/tests/test_spike_amplitudes.py b/...processing/tests/test_spike_amplitudes.py → ...processing/tests/test_spike_amplitudes.py
diff --git a/...tprocessing/tests/test_spike_locations.py → ...tprocessing/tests/test_spike_locations.py b/...tprocessing/tests/test_spike_locations.py → ...tprocessing/tests/test_spike_locations.py
diff --git a/...processing/tests/test_template_metrics.py → ...processing/tests/test_template_metrics.py b/...processing/tests/test_template_metrics.py → ...processing/tests/test_template_metrics.py
diff --git a/...cessing/tests/test_template_similarity.py → ...cessing/tests/test_template_similarity.py b/...cessing/tests/test_template_similarity.py → ...cessing/tests/test_template_similarity.py
diff --git a/...rocessing/tests/test_unit_localization.py → ...rocessing/tests/test_unit_localization.py b/...rocessing/tests/test_unit_localization.py → ...rocessing/tests/test_unit_localization.py
diff --git a/...rface/postprocessing/unit_localization.py → ...rface/postprocessing/unit_localization.py b/...rface/postprocessing/unit_localization.py → ...rface/postprocessing/unit_localization.py
diff --git a/spikeinterface/preprocessing/__init__.py → src/spikeinterface/preprocessing/__init__.py b/spikeinterface/preprocessing/__init__.py → src/spikeinterface/preprocessing/__init__.py
diff --git a/...interface/preprocessing/align_snippets.py → ...interface/preprocessing/align_snippets.py b/...interface/preprocessing/align_snippets.py → ...interface/preprocessing/align_snippets.py
diff --git a/...preprocessing/average_across_direction.py → ...preprocessing/average_across_direction.py b/...preprocessing/average_across_direction.py → ...preprocessing/average_across_direction.py
diff --git a/...terface/preprocessing/basepreprocessor.py → ...terface/preprocessing/basepreprocessor.py b/...terface/preprocessing/basepreprocessor.py → ...terface/preprocessing/basepreprocessor.py
diff --git a/spikeinterface/preprocessing/clip.py → src/spikeinterface/preprocessing/clip.py b/spikeinterface/preprocessing/clip.py → src/spikeinterface/preprocessing/clip.py
diff --git a/...terface/preprocessing/common_reference.py → ...terface/preprocessing/common_reference.py b/...terface/preprocessing/common_reference.py → ...terface/preprocessing/common_reference.py
diff --git a/spikeinterface/preprocessing/correct_lsb.py → ...ikeinterface/preprocessing/correct_lsb.py b/spikeinterface/preprocessing/correct_lsb.py → ...ikeinterface/preprocessing/correct_lsb.py
diff --git a/...eprocessing/deepinterpolation/__init__.py → ...eprocessing/deepinterpolation/__init__.py b/...eprocessing/deepinterpolation/__init__.py → ...eprocessing/deepinterpolation/__init__.py
diff --git a/...ng/deepinterpolation/deepinterpolation.py → ...ng/deepinterpolation/deepinterpolation.py b/...ng/deepinterpolation/deepinterpolation.py → ...ng/deepinterpolation/deepinterpolation.py
diff --git a/spikeinterface/preprocessing/depth_order.py → ...ikeinterface/preprocessing/depth_order.py b/spikeinterface/preprocessing/depth_order.py → ...ikeinterface/preprocessing/depth_order.py
diff --git a/...face/preprocessing/detect_bad_channels.py → ...face/preprocessing/detect_bad_channels.py b/...face/preprocessing/detect_bad_channels.py → ...face/preprocessing/detect_bad_channels.py
diff --git a/...e/preprocessing/directional_derivative.py → ...e/preprocessing/directional_derivative.py b/...e/preprocessing/directional_derivative.py → ...e/preprocessing/directional_derivative.py
diff --git a/spikeinterface/preprocessing/filter.py → src/spikeinterface/preprocessing/filter.py b/spikeinterface/preprocessing/filter.py → src/spikeinterface/preprocessing/filter.py
diff --git a/...einterface/preprocessing/filter_opencl.py → ...einterface/preprocessing/filter_opencl.py b/...einterface/preprocessing/filter_opencl.py → ...einterface/preprocessing/filter_opencl.py
diff --git a/.../preprocessing/highpass_spatial_filter.py → .../preprocessing/highpass_spatial_filter.py b/.../preprocessing/highpass_spatial_filter.py → .../preprocessing/highpass_spatial_filter.py
diff --git a/...preprocessing/interpolate_bad_channels.py → ...preprocessing/interpolate_bad_channels.py b/...preprocessing/interpolate_bad_channels.py → ...preprocessing/interpolate_bad_channels.py
diff --git a/...nterface/preprocessing/normalize_scale.py → ...nterface/preprocessing/normalize_scale.py b/...nterface/preprocessing/normalize_scale.py → ...nterface/preprocessing/normalize_scale.py
diff --git a/spikeinterface/preprocessing/phase_shift.py → ...ikeinterface/preprocessing/phase_shift.py b/spikeinterface/preprocessing/phase_shift.py → ...ikeinterface/preprocessing/phase_shift.py
diff --git a/...face/preprocessing/preprocessing_tools.py → ...face/preprocessing/preprocessing_tools.py b/...face/preprocessing/preprocessing_tools.py → ...face/preprocessing/preprocessing_tools.py
diff --git a/...erface/preprocessing/preprocessinglist.py → ...erface/preprocessing/preprocessinglist.py b/...erface/preprocessing/preprocessinglist.py → ...erface/preprocessing/preprocessinglist.py
diff --git a/spikeinterface/preprocessing/rectify.py → src/spikeinterface/preprocessing/rectify.py b/spikeinterface/preprocessing/rectify.py → src/spikeinterface/preprocessing/rectify.py
diff --git a/...terface/preprocessing/remove_artifacts.py → ...terface/preprocessing/remove_artifacts.py b/...terface/preprocessing/remove_artifacts.py → ...terface/preprocessing/remove_artifacts.py
diff --git a/spikeinterface/preprocessing/resample.py → src/spikeinterface/preprocessing/resample.py b/spikeinterface/preprocessing/resample.py → src/spikeinterface/preprocessing/resample.py
diff --git a/...nterface/preprocessing/silence_periods.py → ...nterface/preprocessing/silence_periods.py b/...nterface/preprocessing/silence_periods.py → ...nterface/preprocessing/silence_periods.py
diff --git a/...reprocessing/tests/test_align_snippets.py → ...reprocessing/tests/test_align_snippets.py b/...reprocessing/tests/test_align_snippets.py → ...reprocessing/tests/test_align_snippets.py
diff --git a/...ng/tests/test_average_across_direction.py → ...ng/tests/test_average_across_direction.py b/...ng/tests/test_average_across_direction.py → ...ng/tests/test_average_across_direction.py
diff --git a/...nterface/preprocessing/tests/test_clip.py → ...nterface/preprocessing/tests/test_clip.py b/...nterface/preprocessing/tests/test_clip.py → ...nterface/preprocessing/tests/test_clip.py
diff --git a/...processing/tests/test_common_reference.py → ...processing/tests/test_common_reference.py b/...processing/tests/test_common_reference.py → ...processing/tests/test_common_reference.py
diff --git a/...e/preprocessing/tests/test_correct_lsb.py → ...e/preprocessing/tests/test_correct_lsb.py b/...e/preprocessing/tests/test_correct_lsb.py → ...e/preprocessing/tests/test_correct_lsb.py
diff --git a/...e/preprocessing/tests/test_depth_order.py → ...e/preprocessing/tests/test_depth_order.py b/...e/preprocessing/tests/test_depth_order.py → ...e/preprocessing/tests/test_depth_order.py
diff --git a/...cessing/tests/test_detect_bad_channels.py → ...cessing/tests/test_detect_bad_channels.py b/...cessing/tests/test_detect_bad_channels.py → ...cessing/tests/test_detect_bad_channels.py
diff --git a/...sing/tests/test_directional_derivative.py → ...sing/tests/test_directional_derivative.py b/...sing/tests/test_directional_derivative.py → ...sing/tests/test_directional_derivative.py
diff --git a/...erface/preprocessing/tests/test_filter.py → ...erface/preprocessing/tests/test_filter.py b/...erface/preprocessing/tests/test_filter.py → ...erface/preprocessing/tests/test_filter.py
diff --git a/...ing/tests/test_highpass_spatial_filter.py → ...ing/tests/test_highpass_spatial_filter.py b/...ing/tests/test_highpass_spatial_filter.py → ...ing/tests/test_highpass_spatial_filter.py
diff --git a/...ng/tests/test_interpolate_bad_channels.py → ...ng/tests/test_interpolate_bad_channels.py b/...ng/tests/test_interpolate_bad_channels.py → ...ng/tests/test_interpolate_bad_channels.py
diff --git a/...eprocessing/tests/test_normalize_scale.py → ...eprocessing/tests/test_normalize_scale.py b/...eprocessing/tests/test_normalize_scale.py → ...eprocessing/tests/test_normalize_scale.py
diff --git a/...e/preprocessing/tests/test_phase_shift.py → ...e/preprocessing/tests/test_phase_shift.py b/...e/preprocessing/tests/test_phase_shift.py → ...e/preprocessing/tests/test_phase_shift.py
diff --git a/...cessing/tests/test_preprocessing_tools.py → ...cessing/tests/test_preprocessing_tools.py b/...cessing/tests/test_preprocessing_tools.py → ...cessing/tests/test_preprocessing_tools.py
diff --git a/...rface/preprocessing/tests/test_rectify.py → ...rface/preprocessing/tests/test_rectify.py b/...rface/preprocessing/tests/test_rectify.py → ...rface/preprocessing/tests/test_rectify.py
diff --git a/...processing/tests/test_remove_artifacts.py → ...processing/tests/test_remove_artifacts.py b/...processing/tests/test_remove_artifacts.py → ...processing/tests/test_remove_artifacts.py
diff --git a/...face/preprocessing/tests/test_resample.py → ...face/preprocessing/tests/test_resample.py b/...face/preprocessing/tests/test_resample.py → ...face/preprocessing/tests/test_resample.py
diff --git a/...rface/preprocessing/tests/test_silence.py → ...rface/preprocessing/tests/test_silence.py b/...rface/preprocessing/tests/test_silence.py → ...rface/preprocessing/tests/test_silence.py
diff --git a/...erface/preprocessing/tests/test_whiten.py → ...erface/preprocessing/tests/test_whiten.py b/...erface/preprocessing/tests/test_whiten.py → ...erface/preprocessing/tests/test_whiten.py
diff --git a/.../preprocessing/tests/test_zero_padding.py → .../preprocessing/tests/test_zero_padding.py b/.../preprocessing/tests/test_zero_padding.py → .../preprocessing/tests/test_zero_padding.py
diff --git a/...face/preprocessing/tests/testing_tools.py → ...face/preprocessing/tests/testing_tools.py b/...face/preprocessing/tests/testing_tools.py → ...face/preprocessing/tests/testing_tools.py
diff --git a/spikeinterface/preprocessing/whiten.py → src/spikeinterface/preprocessing/whiten.py b/spikeinterface/preprocessing/whiten.py → src/spikeinterface/preprocessing/whiten.py
diff --git a/...terface/preprocessing/zero_channel_pad.py → ...terface/preprocessing/zero_channel_pad.py b/...terface/preprocessing/zero_channel_pad.py → ...terface/preprocessing/zero_channel_pad.py
diff --git a/spikeinterface/qualitymetrics/__init__.py → ...spikeinterface/qualitymetrics/__init__.py b/spikeinterface/qualitymetrics/__init__.py → ...spikeinterface/qualitymetrics/__init__.py
diff --git a/...einterface/qualitymetrics/misc_metrics.py → ...einterface/qualitymetrics/misc_metrics.py b/...einterface/qualitymetrics/misc_metrics.py → ...einterface/qualitymetrics/misc_metrics.py
diff --git a/spikeinterface/qualitymetrics/pca_metrics.py → ...keinterface/qualitymetrics/pca_metrics.py b/spikeinterface/qualitymetrics/pca_metrics.py → ...keinterface/qualitymetrics/pca_metrics.py
diff --git a/...alitymetrics/quality_metric_calculator.py → ...alitymetrics/quality_metric_calculator.py b/...alitymetrics/quality_metric_calculator.py → ...alitymetrics/quality_metric_calculator.py
diff --git a/...ace/qualitymetrics/quality_metric_list.py → ...ace/qualitymetrics/quality_metric_list.py b/...ace/qualitymetrics/quality_metric_list.py → ...ace/qualitymetrics/quality_metric_list.py
diff --git a/...tymetrics/tests/test_metrics_functions.py → ...tymetrics/tests/test_metrics_functions.py b/...tymetrics/tests/test_metrics_functions.py → ...tymetrics/tests/test_metrics_functions.py
diff --git a/...s/tests/test_quality_metric_calculator.py → ...s/tests/test_quality_metric_calculator.py b/...s/tests/test_quality_metric_calculator.py → ...s/tests/test_quality_metric_calculator.py
diff --git a/spikeinterface/qualitymetrics/utils.py → src/spikeinterface/qualitymetrics/utils.py b/spikeinterface/qualitymetrics/utils.py → src/spikeinterface/qualitymetrics/utils.py
diff --git a/spikeinterface/sorters/__init__.py → src/spikeinterface/sorters/__init__.py b/spikeinterface/sorters/__init__.py → src/spikeinterface/sorters/__init__.py
diff --git a/spikeinterface/sorters/basesorter.py → src/spikeinterface/sorters/basesorter.py b/spikeinterface/sorters/basesorter.py → src/spikeinterface/sorters/basesorter.py
diff --git a/spikeinterface/sorters/external/__init__.py → ...ikeinterface/sorters/external/__init__.py b/spikeinterface/sorters/external/__init__.py → ...ikeinterface/sorters/external/__init__.py
diff --git a/spikeinterface/sorters/external/combinato.py → ...keinterface/sorters/external/combinato.py b/spikeinterface/sorters/external/combinato.py → ...keinterface/sorters/external/combinato.py
diff --git a/spikeinterface/sorters/external/hdsort.py → ...spikeinterface/sorters/external/hdsort.py b/spikeinterface/sorters/external/hdsort.py → ...spikeinterface/sorters/external/hdsort.py
diff --git a/...nterface/sorters/external/hdsort_master.m → ...nterface/sorters/external/hdsort_master.m b/...nterface/sorters/external/hdsort_master.m → ...nterface/sorters/external/hdsort_master.m
diff --git a/...terface/sorters/external/herdingspikes.py → ...terface/sorters/external/herdingspikes.py b/...terface/sorters/external/herdingspikes.py → ...terface/sorters/external/herdingspikes.py
diff --git a/spikeinterface/sorters/external/ironclust.py → ...keinterface/sorters/external/ironclust.py b/spikeinterface/sorters/external/ironclust.py → ...keinterface/sorters/external/ironclust.py
diff --git a/spikeinterface/sorters/external/kilosort.py → ...ikeinterface/sorters/external/kilosort.py b/spikeinterface/sorters/external/kilosort.py → ...ikeinterface/sorters/external/kilosort.py
diff --git a/spikeinterface/sorters/external/kilosort2.py → ...keinterface/sorters/external/kilosort2.py b/spikeinterface/sorters/external/kilosort2.py → ...keinterface/sorters/external/kilosort2.py
diff --git a/...interface/sorters/external/kilosort2_5.py → ...interface/sorters/external/kilosort2_5.py b/...interface/sorters/external/kilosort2_5.py → ...interface/sorters/external/kilosort2_5.py
diff --git a/...ace/sorters/external/kilosort2_5_master.m → ...ace/sorters/external/kilosort2_5_master.m b/...ace/sorters/external/kilosort2_5_master.m → ...ace/sorters/external/kilosort2_5_master.m
diff --git a/...rface/sorters/external/kilosort2_master.m → ...rface/sorters/external/kilosort2_master.m b/...rface/sorters/external/kilosort2_master.m → ...rface/sorters/external/kilosort2_master.m
diff --git a/spikeinterface/sorters/external/kilosort3.py → ...keinterface/sorters/external/kilosort3.py b/spikeinterface/sorters/external/kilosort3.py → ...keinterface/sorters/external/kilosort3.py
diff --git a/...rface/sorters/external/kilosort3_master.m → ...rface/sorters/external/kilosort3_master.m b/...rface/sorters/external/kilosort3_master.m → ...rface/sorters/external/kilosort3_master.m
diff --git a/...erface/sorters/external/kilosort_master.m → ...erface/sorters/external/kilosort_master.m b/...erface/sorters/external/kilosort_master.m → ...erface/sorters/external/kilosort_master.m
diff --git a/...nterface/sorters/external/kilosortbase.py → ...nterface/sorters/external/kilosortbase.py b/...nterface/sorters/external/kilosortbase.py → ...nterface/sorters/external/kilosortbase.py
diff --git a/spikeinterface/sorters/external/klusta.py → ...spikeinterface/sorters/external/klusta.py b/spikeinterface/sorters/external/klusta.py → ...spikeinterface/sorters/external/klusta.py
diff --git a/...orters/external/klusta_config_default.prm → ...orters/external/klusta_config_default.prm b/...orters/external/klusta_config_default.prm → ...orters/external/klusta_config_default.prm
diff --git a/...terface/sorters/external/mountainsort4.py → ...terface/sorters/external/mountainsort4.py b/...terface/sorters/external/mountainsort4.py → ...terface/sorters/external/mountainsort4.py
diff --git a/...einterface/sorters/external/pykilosort.py → ...einterface/sorters/external/pykilosort.py b/...einterface/sorters/external/pykilosort.py → ...einterface/sorters/external/pykilosort.py
diff --git a/...sorters/external/sc_config_default.params → ...sorters/external/sc_config_default.params b/...sorters/external/sc_config_default.params → ...sorters/external/sc_config_default.params
diff --git a/...erface/sorters/external/spyking_circus.py → ...erface/sorters/external/spyking_circus.py b/...erface/sorters/external/spyking_circus.py → ...erface/sorters/external/spyking_circus.py
diff --git a/.../sorters/external/tests/test_combinato.py → .../sorters/external/tests/test_combinato.py b/.../sorters/external/tests/test_combinato.py → .../sorters/external/tests/test_combinato.py
diff --git a/...ace/sorters/external/tests/test_hdsort.py → ...ace/sorters/external/tests/test_hdsort.py b/...ace/sorters/external/tests/test_hdsort.py → ...ace/sorters/external/tests/test_hdsort.py
diff --git a/...ters/external/tests/test_herdingspikes.py → ...ters/external/tests/test_herdingspikes.py b/...ters/external/tests/test_herdingspikes.py → ...ters/external/tests/test_herdingspikes.py
diff --git a/.../sorters/external/tests/test_ironclust.py → .../sorters/external/tests/test_ironclust.py b/.../sorters/external/tests/test_ironclust.py → .../sorters/external/tests/test_ironclust.py
diff --git a/...e/sorters/external/tests/test_kilosort.py → ...e/sorters/external/tests/test_kilosort.py b/...e/sorters/external/tests/test_kilosort.py → ...e/sorters/external/tests/test_kilosort.py
diff --git a/.../sorters/external/tests/test_kilosort2.py → .../sorters/external/tests/test_kilosort2.py b/.../sorters/external/tests/test_kilosort2.py → .../sorters/external/tests/test_kilosort2.py
diff --git a/...orters/external/tests/test_kilosort2_5.py → ...orters/external/tests/test_kilosort2_5.py b/...orters/external/tests/test_kilosort2_5.py → ...orters/external/tests/test_kilosort2_5.py
diff --git a/.../sorters/external/tests/test_kilosort3.py → .../sorters/external/tests/test_kilosort3.py b/.../sorters/external/tests/test_kilosort3.py → .../sorters/external/tests/test_kilosort3.py
diff --git a/...ace/sorters/external/tests/test_klusta.py → ...ace/sorters/external/tests/test_klusta.py b/...ace/sorters/external/tests/test_klusta.py → ...ace/sorters/external/tests/test_klusta.py
diff --git a/...ters/external/tests/test_mountainsort4.py → ...ters/external/tests/test_mountainsort4.py b/...ters/external/tests/test_mountainsort4.py → ...ters/external/tests/test_mountainsort4.py
diff --git a/...sorters/external/tests/test_pykilosort.py → ...sorters/external/tests/test_pykilosort.py b/...sorters/external/tests/test_pykilosort.py → ...sorters/external/tests/test_pykilosort.py
diff --git a/...rnal/tests/test_singularity_containers.py → ...rnal/tests/test_singularity_containers.py b/...rnal/tests/test_singularity_containers.py → ...rnal/tests/test_singularity_containers.py
diff --git a/...ters/external/tests/test_spykingcircus.py → ...ters/external/tests/test_spykingcircus.py b/...ters/external/tests/test_spykingcircus.py → ...ters/external/tests/test_spykingcircus.py
diff --git a/...orters/external/tests/test_tridesclous.py → ...orters/external/tests/test_tridesclous.py b/...orters/external/tests/test_tridesclous.py → ...orters/external/tests/test_tridesclous.py
diff --git a/...e/sorters/external/tests/test_waveclus.py → ...e/sorters/external/tests/test_waveclus.py b/...e/sorters/external/tests/test_waveclus.py → ...e/sorters/external/tests/test_waveclus.py
diff --git a/.../external/tests/test_waveclus_snippets.py → .../external/tests/test_waveclus_snippets.py b/.../external/tests/test_waveclus_snippets.py → .../external/tests/test_waveclus_snippets.py
diff --git a/...rface/sorters/external/tests/test_yass.py → ...rface/sorters/external/tests/test_yass.py b/...rface/sorters/external/tests/test_yass.py → ...rface/sorters/external/tests/test_yass.py