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Merge pull request #1953 from zm711/rtd_display
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Change Docstrings to make sure they maintain RTD boundaries
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alejoe91 authored Sep 4, 2023
2 parents ee2237b + d8092bf commit 3359647
Showing 1 changed file with 9 additions and 6 deletions.
15 changes: 9 additions & 6 deletions src/spikeinterface/qualitymetrics/misc_metrics.py
Original file line number Diff line number Diff line change
Expand Up @@ -242,7 +242,7 @@ def compute_isi_violations(waveform_extractor, isi_threshold_ms=1.5, min_isi_ms=
It computes several metrics related to isi violations:
* isi_violations_ratio: the relative firing rate of the hypothetical neurons that are
generating the ISI violations. Described in [1]. See Notes.
generating the ISI violations. Described in [Hill]_. See Notes.
* isi_violation_count: number of ISI violations
Parameters
Expand All @@ -262,7 +262,7 @@ def compute_isi_violations(waveform_extractor, isi_threshold_ms=1.5, min_isi_ms=
Returns
-------
isi_violations_ratio : dict
The isi violation ratio described in [1].
The isi violation ratio described in [Hill]_.
isi_violation_count : dict
Number of violations.
Expand Down Expand Up @@ -343,7 +343,7 @@ def compute_refrac_period_violations(
Returns
-------
rp_contamination : dict
The refactory period contamination described in [1].
The refactory period contamination described in [Llobet]_.
rp_violations : dict
Number of refractory period violations.
Expand Down Expand Up @@ -446,7 +446,8 @@ def compute_sliding_rp_violations(
References
----------
Based on metrics described in [IBL]_
This code was adapted from https://github.com/SteinmetzLab/slidingRefractory/blob/1.0.0/python/slidingRP/metrics.py
This code was adapted from:
https://github.com/SteinmetzLab/slidingRefractory/blob/1.0.0/python/slidingRP/metrics.py
"""
duration = waveform_extractor.get_total_duration()
sorting = waveform_extractor.sorting
Expand Down Expand Up @@ -542,7 +543,8 @@ def compute_amplitude_cutoffs(
----------
Inspired by metric described in [Hill]_
This code was adapted from https://github.com/AllenInstitute/ecephys_spike_sorting/tree/master/ecephys_spike_sorting/modules/quality_metrics
This code was adapted from:
https://github.com/AllenInstitute/ecephys_spike_sorting/tree/master/ecephys_spike_sorting/modules/quality_metrics
"""
sorting = waveform_extractor.sorting
Expand Down Expand Up @@ -1013,7 +1015,8 @@ def slidingRP_violations(
return_conf_matrix : bool
If True, the confidence matrix (n_contaminations, n_ref_periods) is returned, by default False
See: https://github.com/SteinmetzLab/slidingRefractory/blob/master/python/slidingRP/metrics.py#L166
Code adapted from:
https://github.com/SteinmetzLab/slidingRefractory/blob/master/python/slidingRP/metrics.py#L166
Returns
-------
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