Remove venv in full-tests-with-codecov

.github/actions/build-test-environment/action.yml

@@ -1,41 +1,20 @@
 name: Install packages
 description: This action installs the package and its dependencies for testing
 
-inputs:
-  python-version:
-    description: 'Python version to set up'
-    required: false
-  os:
-    description: 'Operating system to set up'
-    required: false
-
 runs:
   using: "composite"
   steps:
     - name: Install dependencies
       run: |
-        sudo apt install git
         git config --global user.email "[email protected]"
         git config --global user.name "CI Almighty"
-        python -m venv ${{ github.workspace }}/test_env # Environment used in the caching step
-        python -m pip install -U pip  # Official recommended way
-        source ${{ github.workspace }}/test_env/bin/activate
         pip install tabulate  # This produces summaries at the end
         pip install -e .[test,extractors,streaming_extractors,test_extractors,full]
       shell: bash
-    - name: Force installation of latest dev from key-packages when running dev (not release)
-      run: |
-        source ${{ github.workspace }}/test_env/bin/activate
-        spikeinterface_is_dev_version=$(python -c "import spikeinterface; print(spikeinterface.DEV_MODE)")
-        if [ $spikeinterface_is_dev_version = "True" ]; then
-          echo "Running spikeinterface dev version"
-          pip install --no-cache-dir git+https://github.com/NeuralEnsemble/python-neo
-          pip install --no-cache-dir git+https://github.com/SpikeInterface/probeinterface
-        fi
-          echo "Running tests for release, using pyproject.toml versions of neo and probeinterface"
+    - name: Install git-annex
       shell: bash
-    - name: git-annex install
       run: |
+        pip install datalad-installer
         wget https://downloads.kitenet.net/git-annex/linux/current/git-annex-standalone-amd64.tar.gz
         mkdir /home/runner/work/installation
         mv git-annex-standalone-amd64.tar.gz /home/runner/work/installation/
@@ -44,4 +23,15 @@ runs:
         tar xvzf git-annex-standalone-amd64.tar.gz
         echo "$(pwd)/git-annex.linux" >> $GITHUB_PATH
         cd $workdir
+        git config --global filter.annex.process "git-annex filter-process"  # recommended for efficiency
+    - name: Force installation of latest dev from key-packages when running dev (not release)
+      run: |
+        source ${{ github.workspace }}/test_env/bin/activate
+        spikeinterface_is_dev_version=$(python -c "import spikeinterface; print(spikeinterface.DEV_MODE)")
+        if [ $spikeinterface_is_dev_version = "True" ]; then
+          echo "Running spikeinterface dev version"
+          pip install --no-cache-dir git+https://github.com/NeuralEnsemble/python-neo
+          pip install --no-cache-dir git+https://github.com/SpikeInterface/probeinterface
+        fi
+          echo "Running tests for release, using pyproject.toml versions of neo and probeinterface"
       shell: bash

.github/workflows/all-tests.yml

@@ -47,7 +47,7 @@ jobs:
             echo "$file was changed"
           done
 
-      - name: Set testing environment  # This decides which tests are run and whether to install especial dependencies
+      - name: Set testing environment  # This decides which tests are run and whether to install special dependencies
         shell: bash
         run: |
           changed_files="${{ steps.changed-files.outputs.all_changed_files }}"