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Automatic curation with metrics #5158

Automatic curation with metrics

Automatic curation with metrics #5158

name: Testing deepinterpolation
on:
pull_request:
types: [synchronize, opened, reopened]
branches:
- main
concurrency: # Cancel previous workflows on the same pull request
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
build-and-test:
name: Test on ${{ matrix.os }} OS
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: ["ubuntu-latest"]
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: '3.9'
- name: Get changed files
id: changed-files
uses: tj-actions/changed-files@v41
- name: Deepinteprolation changes
id: modules-changed
run: |
for file in ${{ steps.changed-files.outputs.all_changed_files }}; do
if [[ $file == *"/deepinterpolation/"* ]]; then
echo "DeepInterpolation changed"
echo "DEEPINTERPOLATION_CHANGED=true" >> $GITHUB_OUTPUT
fi
done
- name: Install dependencies
if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }}
run: |
python -m pip install -U pip # Official recommended way
# install deepinteprolation
pip install tensorflow==2.7.0
pip install deepinterpolation@git+https://github.com/AllenInstitute/deepinterpolation.git
pip install protobuf==3.20.*
pip install -e .[full,test_core]
- name: Test DeepInterpolation with pytest
if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }}
run: |
pytest -v src/spikeinterface/preprocessing/deepinterpolation
shell: bash # Necessary for pipeline to work on windows