Fix silence periods #5139
Workflow file for this run
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name: Testing deepinterpolation | |
on: | |
pull_request: | |
types: [synchronize, opened, reopened] | |
branches: | |
- main | |
concurrency: # Cancel previous workflows on the same pull request | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
build-and-test: | |
name: Test on ${{ matrix.os }} OS | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest"] | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: '3.9' | |
- name: Get changed files | |
id: changed-files | |
uses: tj-actions/changed-files@v41 | |
- name: Deepinteprolation changes | |
id: modules-changed | |
run: | | |
for file in ${{ steps.changed-files.outputs.all_changed_files }}; do | |
if [[ $file == *"/deepinterpolation/"* ]]; then | |
echo "DeepInterpolation changed" | |
echo "DEEPINTERPOLATION_CHANGED=true" >> $GITHUB_OUTPUT | |
fi | |
done | |
- name: Install dependencies | |
if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }} | |
run: | | |
python -m pip install -U pip # Official recommended way | |
# install deepinteprolation | |
pip install tensorflow==2.7.0 | |
pip install deepinterpolation@git+https://github.com/AllenInstitute/deepinterpolation.git | |
pip install protobuf==3.20.* | |
pip install -e .[full,test_core] | |
- name: Test DeepInterpolation with pytest | |
if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }} | |
run: | | |
pytest -v src/spikeinterface/preprocessing/deepinterpolation | |
shell: bash # Necessary for pipeline to work on windows |