Updates to kilosort 4: version >= 4.0.16, `bad_channels`, `clear_cache`, `use_binary_file` #68

	name: Testing Kilosort4

	on:
	workflow_dispatch:
	schedule:
	- cron: "0 12 * * 0" # Weekly on Sunday at noon UTC
	pull_request:
	paths:
	- '**/kilosort4.py'

	jobs:
	versions:
	# Poll Pypi for all released KS4 versions >4.0.16, save to JSON
	# and store them in a matrix for the next job.
	runs-on: ubuntu-latest
	outputs:
	matrix: ${{ steps.set-matrix.outputs.matrix }}
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.12

	- name: Install dependencies
	run: \|
	pip install requests packaging
	pip install .

	- name: Fetch package versions from PyPI
	run: \|
	python .github/scripts/check_kilosort4_releases.py
	shell: bash

	- name: Set matrix data
	id: set-matrix
	run: \|
	echo "matrix=$(jq -c . < .github/scripts/kilosort4-latest-version.json)" >> $GITHUB_OUTPUT

	test:
	needs: versions
	name: ${{ matrix.ks_version }}
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.12"]
	os: [ubuntu-latest]
	ks_version: ${{ fromJson(needs.versions.outputs.matrix) }}
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: Setup Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install SpikeInterface
	run: \|
	pip install -e .[test]
	shell: bash

	- name: Install Kilosort
	run: \|
	pip install kilosort==${{ matrix.ks_version }}
	shell: bash

	- name: Run new kilosort4 tests
	run: \|
	pytest .github/scripts/test_kilosort4_ci.py
	shell: bash

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