build #71
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| name: build | |
| on: | |
| workflow_run: | |
| workflows: [check] | |
| types: [completed] | |
| pull_request: | |
| branches: | |
| - main | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ubuntu-22.04 | |
| #if: ${{ github.event.workflow_run.conclusion == 'success' }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install linux dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libxml2-dev libssl-dev libcurl4-openssl-dev libudunits2-dev libopenblas-base imagemagick | |
| - name: Check R installation and variables | |
| run: | | |
| Rscript -e "print('R installation works!')" | |
| echo "Github actor: ${GITHUB_ACTOR}" | |
| echo "Github repository: ${GITHUB_REPOSITORY}" | |
| echo "Folder contents at $(pwd):" | |
| ls -lh | |
| - name: Cache R packages | |
| id: cache-rp | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-cache-rp | |
| - name: Install R dependencies | |
| if: steps.cache-rp.outputs.cache-hit != 'true' | |
| run: | | |
| Rscript -e 'install.packages(c("yaml","knitr","rmarkdown","purrr","DT"))' | |
| echo "R directory size:" | |
| du -sh /home/runner/work/_temp/Library | |
| - name: Process images | |
| run: | | |
| # image processing using imagick convert | |
| # crops to centered square and rescales to 100px x 100px | |
| # masks to circular png | |
| convert --version | |
| if [[ ! -d trombinoscope/photo ]] | |
| then | |
| echo >&2 "Directory trombinoscope/photo doesn't exist."; exit 1; | |
| fi | |
| if [[ -d scaled ]] | |
| then | |
| rm -rf scaled | |
| mkdir scaled | |
| else | |
| mkdir scaled | |
| fi | |
| # centered square crop | |
| size='%[fx: w>h ? h : w ]' | |
| offset_x='%[fx: w>h ? (w-h)/2 : 0 ]' | |
| offset_y='%[fx: w>h ? 0 : (h-w)/2 ]' | |
| viewport="${size}x${size}+${offset_x}+${offset_y}" | |
| for i in trombinoscope/photo/*g | |
| do | |
| fname=$(basename $i | sed 's/\(^[a-z0-9|-]\+\)\(.*$\)/\1.png/g') | |
| convert $i -set option:distort:viewport "$viewport" -filter point -distort SRT 0 +repage -adaptive-resize 100x100 scaled/${fname} | |
| convert -size 100x100 xc:none -fill scaled/${fname} -draw "circle 50,50 50,1" scaled/${fname} | |
| done | |
| echo "Folder contents at $(pwd):" | |
| ls -lh | |
| echo "Folder contents at $(pwd)/scaled:" | |
| ls -lh ./scaled/ | |
| - name: Render page | |
| run: | | |
| # Render website | |
| Rscript -e "rmarkdown::render('index.Rmd')" | |
| echo "Folder contents at $(pwd):" | |
| ls -lh | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: staff-artifact | |
| path: | | |
| index.html | |
| index_files | |
| assets | |
| scaled |