Merge from master (#145)

* Update build.yml * Reverted back to original build.sh * Added missing file (possibly forgot to commmit/push it) (#136) * added python build file to get dynamically current pom.xml dependencies, add build.sh deprecated and improve current github workflow (#138) Co-authored-by: Dorian Grasset <[email protected]> * Update genomes.json Add 4 new genomes for Citrus medica, C. micrantha, C. maxima and C. reticulata --------- Co-authored-by: Dorian Grasset <[email protected]> Co-authored-by: droc <[email protected]>
SouthGreenPlatform · Sep 23, 2024 · 3be5667 · 3be5667
1 parent 14baa09
commit 3be5667
Showing 1 changed file with 69 additions and 1 deletion.
diff --git a/src/main/webapp/res/genomes.json b/src/main/webapp/res/genomes.json
@@ -186,5 +186,73 @@
  "order": 0
  }
  ]
+ },
+ {
+ "id": "citrus_medica",
+ "name": "Citrus medica",
+ "fastaURL": "https://jbrowse.southgreen.fr/citrus_medica/seq/CITME.fasta",
+ "indexURL": "https://jbrowse.southgreen.fr/citrus_medica/seq/CITME.fasta.fai",
+ "tracks": [
+ {
+ "name": "Locus",
+ "type": "annotation",
+ "format": "gff3",
+ "sourceType": "file",
+ "url": "https://jbrowse.southgreen.fr/citrus_medica/gff3/CITME.gff3.gz",
+ "indexURL": "https://jbrowse.southgreen.fr/citrus_medica/gff3/CITME.gff3.gz.tbi",
+ "order": 0
+ }
+ ]
+ },
+ {
+ "id": "citrus_reticulata",
+ "name": "Citrus reticulata",
+ "fastaURL": "https://jbrowse.southgreen.fr/citrus_reticulata/seq/CITRE.fasta",
+ "indexURL": "https://jbrowse.southgreen.fr/citrus_reticulata/seq/CITRE.fasta.fai",
+ "tracks": [
+ {
+ "name": "Locus",
+ "type": "annotation",
+ "format": "gff3",
+ "sourceType": "file",
+ "url": "https://jbrowse.southgreen.fr/citrus_reticulata/gff3/CITRE.gff3.gz",
+ "indexURL": "https://jbrowse.southgreen.fr/citrus_reticulata/gff3/CITRE.gff3.gz.tbi",
+ "order": 0
+ }
+ ]
+ },
+ {
+ "id": "citrus_micrantha",
+ "name": "Citrus micrantha",
+ "fastaURL": "https://jbrowse.southgreen.fr/citrus_micrantha/seq/CITMI.fasta",
+ "indexURL": "https://jbrowse.southgreen.fr/citrus_micrantha/seq/CITMI.fasta.fai",
+ "tracks": [
+ {
+ "name": "Locus",
+ "type": "annotation",
+ "format": "gff3",
+ "sourceType": "file",
+ "url": "https://jbrowse.southgreen.fr/citrus_micrantha/gff3/CITMI.gff3.gz",
+ "indexURL": "https://jbrowse.southgreen.fr/citrus_micrantha/gff3/CITMI.gff3.gz.tbi",
+ "order": 0
+ }
+ ]
+ },
+ {
+ "id": "citrus_maxima",
+ "name": "Citrus maxima",
+ "fastaURL": "https://jbrowse.southgreen.fr/citrus_maxima/seq/CITMA.fasta",
+ "indexURL": "https://jbrowse.southgreen.fr/citrus_maxima/seq/CITMA.fasta.fai",
+ "tracks": [
+ {
+ "name": "Locus",
+ "type": "annotation",
+ "format": "gff3",
+ "sourceType": "file",
+ "url": "https://jbrowse.southgreen.fr/citrus_maxima/gff3/CITMA.gff3.gz",
+ "indexURL": "https://jbrowse.southgreen.fr/citrus_maxima/gff3/CITMA.gff3.gz.tbi",
+ "order": 0
+ }
+ ]
  }
-]
+]