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Merge pull request easybuilders#20721 from sassy-crick/20240604153809…
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…_new_pr_CellRanger-ARC202

{bio}[system/system] CellRanger-ARC v2.0.2
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verdurin authored Jun 4, 2024
2 parents 62af27c + 124ad3c commit 5c9b616
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37 changes: 37 additions & 0 deletions easybuild/easyconfigs/c/CellRanger-ARC/CellRanger-ARC-2.0.2.eb
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# The STAR binary included in this version has been vectorized with AVX
# hence it is not recommended for systems that do not support it.

easyblock = 'Tarball'

name = 'CellRanger-ARC'
version = '2.0.2'

homepage = 'https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/'
homepage += 'what-is-cell-ranger-arc'
description = """Cell Ranger ARC is a set of analysis pipelines that process
Chromium Single Cell Multiome ATAC + Gene Expression sequencing data to generate a
variety of analyses pertaining to gene expression, chromatin accessibility and
their linkage. Furthermore, since the ATAC and gene expression measurements are on
the very same cell, we are able to perform analyses that link chromatin
accessibility and gene expression."""

toolchain = SYSTEM

download_instructions = """
Download manually from:
https://www.10xgenomics.com/support/software/cell-ranger-arc/downloads
"""

sources = [SOURCELOWER_TAR_GZ]
checksums = ['02a02457938dcf8dcb418b6c65effac06b210282d167437bfa8b2f10023dacae']

keepsymlinks = True

sanity_check_paths = {
'files': ["bin/cellranger-arc"],
'dirs': ["bin/rna", "bin/tenkit"],
}

sanity_check_commands = ['cellranger-arc -h']

moduleclass = 'bio'

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