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…_new_pr_CellRanger-ARC202 {bio}[system/system] CellRanger-ARC v2.0.2
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easybuild/easyconfigs/c/CellRanger-ARC/CellRanger-ARC-2.0.2.eb
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# The STAR binary included in this version has been vectorized with AVX | ||
# hence it is not recommended for systems that do not support it. | ||
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easyblock = 'Tarball' | ||
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name = 'CellRanger-ARC' | ||
version = '2.0.2' | ||
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homepage = 'https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/' | ||
homepage += 'what-is-cell-ranger-arc' | ||
description = """Cell Ranger ARC is a set of analysis pipelines that process | ||
Chromium Single Cell Multiome ATAC + Gene Expression sequencing data to generate a | ||
variety of analyses pertaining to gene expression, chromatin accessibility and | ||
their linkage. Furthermore, since the ATAC and gene expression measurements are on | ||
the very same cell, we are able to perform analyses that link chromatin | ||
accessibility and gene expression.""" | ||
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toolchain = SYSTEM | ||
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download_instructions = """ | ||
Download manually from: | ||
https://www.10xgenomics.com/support/software/cell-ranger-arc/downloads | ||
""" | ||
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sources = [SOURCELOWER_TAR_GZ] | ||
checksums = ['02a02457938dcf8dcb418b6c65effac06b210282d167437bfa8b2f10023dacae'] | ||
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keepsymlinks = True | ||
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sanity_check_paths = { | ||
'files': ["bin/cellranger-arc"], | ||
'dirs': ["bin/rna", "bin/tenkit"], | ||
} | ||
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sanity_check_commands = ['cellranger-arc -h'] | ||
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moduleclass = 'bio' |